Halomonas sp. GFAJ-1: BB497_13480
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Entry
BB497_13480 CDS
T05375
Name
(GenBank) uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
hag
Halomonas sp. GFAJ-1
Pathway
hag03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BB497_13480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hag03400
]
BB497_13480
Enzymes [BR:
hag01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
BB497_13480
DNA repair and recombination proteins [BR:
hag03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
BB497_13480
Prokaryotic type
BB497_13480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
AVI63645
UniProt:
H0IYS5
LinkDB
All DBs
Position
complement(2995728..2996411)
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AA seq
227 aa
AA seq
DB search
MSSPLPNDWHQWLGQEFQADYMKTLKHFLAQEKAAKKVIYPHSTNWFRAFELTPLSEVKV
VILGQDPYHGPNQAHGLCFSVQPGIQVPPSLVNIYKELASDVGFTPVRHGFLEHWARQGV
LLLNTALTVEQGNAASHRGKGWEPFTDRAIETVNQHADPCVFLLWGSHARQKKSLIDQGR
HLVLESPHPSPLSAHRGFFGNQHFSRSNQFLIDNGRSPIAWQLPETP
NT seq
684 nt
NT seq
+upstream
nt +downstream
nt
atgtctagccccttacctaacgactggcatcaatggcttgggcaagagttccaggctgac
tacatgaagactttgaagcactttttggctcaggaaaaagcggccaagaaagttatctac
ccacactcaaccaattggtttagagcatttgaactgacgccgttgagtgaggttaaggtc
gttatattggggcaggacccctaccatgggcctaatcaggcccatgggctctgtttttct
gtacagcctggtattcaggtgccgccgtcactggtaaatatctataaagagttggccagt
gatgttggttttacgccggttcgccatgggtttctagagcattgggccaggcagggtgtg
ctgcttttgaacacagcgctaaccgttgagcagggcaatgcggcatctcatcgggggaag
gggtgggaaccttttaccgaccgcgccattgaaaccgtcaatcaacatgctgacccctgt
gttttcttgctttggggtagccatgcacgccaaaaaaaatccctgattgatcaagggcgg
catttagtgctggagtccccgcacccatcgccgttatcagcacatcgggggttctttggt
aatcagcacttttcccgttctaaccaattcttgatagataacgggcgctcgccgattgcg
tggcaattgccggaaaccccttaa
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