Halocella sp. SP3-1: D7D81_16705
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Entry
D7D81_16705 CDS
T05769
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
hals
Halocella sp. SP3-1
Pathway
hals03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hals00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
D7D81_16705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hals03400
]
D7D81_16705
Enzymes [BR:
hals01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
D7D81_16705
DNA repair and recombination proteins [BR:
hals03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
D7D81_16705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
PDDEXK_10
Motif
Other DBs
NCBI-ProteinID:
AZO96098
LinkDB
All DBs
Position
3495903..3496778
Genome browser
AA seq
291 aa
AA seq
DB search
MLKPPLNPMLLYTREKPFNSRDYIFELKWDGYRCLAYIKQGKVTLQSRNKKYFTYKFPEL
KDISDLIKTNNAVLDGEICWLNKEGKPDFKKLQGRLSTIKPDKKESISLIVWDLLANNNE
DVYHLPLLERKKKLAEIIKKESRLLIVTPYIDTDGEKMFKFAQDNQLEGIVAKEKNSPYE
FKRSRFWYKIKIWQYTDVLIVGYSRNNTALLVGELDKDKLNILGKVKLALQENEKEALFR
FLPSLHTEQLVSNKDFPDIIWVKPHLKCRIRYTELTRHNTFRHGYVVRILF
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atgttaaagccaccacttaaccctatgctactttacacaagagaaaaaccctttaattcc
agagactatatctttgagttaaaatgggatggttaccgctgtctagcctatattaagcag
ggaaaagtaaccctgcagagtagaaacaaaaaatactttacttataaattccctgaatta
aaagatatatccgacctgataaaaaccaataatgctgttctagatggagaaatatgctgg
cttaataaagaaggtaaaccagattttaaaaaactacagggtagattatctactattaaa
ccagataaaaaagagtctatctccctgattgtctgggatctgcttgctaataataatgaa
gatgtctatcacttaccactattggaaagaaaaaaaaagctggctgaaattataaaaaaa
gaaagcagattattaattgttactccatatatagatacagacggcgaaaagatgtttaaa
tttgcccaggataatcaacttgaaggaatagttgccaaagaaaaaaactcaccctatgaa
tttaaaagaagtagattctggtataagataaagatctggcaatacaccgatgttctaatt
gtcggttattcaaggaataatactgccctgcttgtaggtgagttagacaaagataagtta
aatattctaggtaaagttaaactagcccttcaggaaaacgaaaaagaagccctctttagg
tttttaccttcacttcatacagaacaattagtaagcaacaaagattttcctgatataata
tgggtaaaaccgcatcttaagtgccggattcgatatactgaactaacccggcataatacc
tttcgccacggctatgttgttcgaattttgttttaa
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