Homarus americanus (American lobster): 121860829
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Entry
121860829 CDS
T07477
Name
(RefSeq) uncharacterized protein LOC121860829
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
hame
Homarus americanus (American lobster)
Pathway
hame03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hame00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121860829
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hame03021
]
121860829
03019 Messenger RNA biogenesis [BR:
hame03019
]
121860829
Transcription machinery [BR:
hame03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121860829
Messenger RNA biogenesis [BR:
hame03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
121860829
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
CFIA_Pcf11
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
121860829
NCBI-ProteinID:
XP_042214150
LinkDB
All DBs
Position
Unknown
AA seq
2007 aa
AA seq
DB search
MPGPDTSEVAEEYRSSLKDLTINSKPLITMLTMLADENRPHAAIIVKVIEEHIHEVSGPQ
KLPVMYLIDSIMKNVGQDYIKMFGHNIISTFSCVFEKVDERTRKKLYELRHTWNEVFPKS
RLYGLDVKVQSLDPAWPLPTGPAITSQTSSKPNIHINPNIIKPGVVKGSSLTSSSSGHKN
KKELEILKREEQILELERQKLMLEKKKILLEQSRQSKSETKVVKPEPEKPIAKTIDDPSI
SSERRSEFLRSYKIKKKSQNKEESQVSSTIHVDPRRVHQVLPVVAASSPVVTQDPRRINE
TTRDPRLTVENNRDPRITPESSRDPRLNSESSRDPRLNSTLSTNSTKAAKPSEAQVTSSR
DPRVAVKEVKDKDKDKVKEREQRKSKKETPVKPKKEKEVKPSKSEARSTRSLHRAKEKEK
KEKESPVSSSSLKSNITHTKKSLEAPAPVVVNNSTTSFKSNRRNKQRTYKQRTESPVEEP
NSPPRKKRSYDEILSDSDDSDHYQANRPNPALYNKSGEYRGRLEWEGESENALARLSLIS
QDSSLSVRLAPQDKESFILLWEPFFYVNCGFMDFCNIFFTTFYLSLLLARLKKYGSIYAE
VLKRLNVLYYKSYLSVKIAYSKKPEVSSPATSTTGIGDTDYRQFTSPPKRPATNENVSPP
KKDTIIDEKLTEGQQELGLFSKKDVDYRQLLPRPGLLPTPGLPAAFKMMDQDDRNPGSLD
HSSRDPLAPLSTSDQDANISHPKGVLGPPGIDSPAVCPIDPRSRKHSFNSPHAASWEKFR
EKNPEFKEYQRQASMSEADRSFNVDEEDQDMPFCESHSGPPIRGRSFRSRGYEDSSDAAQ
GRHRDGRRLWGEEEEDGVRFQGRSKAAQENFKMILKQALEQRDRGEISENQYQNMANKLR
LLTEQEQIREARERERLHPRSSSQSHFSGNGSWSSGGDSPASVSSSGPPPGAGCIGPGVS
GLSPSNIPSLGRGRGSRDGHLPFTTGSRGGRGTFMGPTVSPAARGMGRAGRGGPGIEDDG
WGRGGIRGRGRRGRGGHQQDDRSWPVRESVLEDEWTGEPDLPYVAEETLKAVARDAETRT
IDIDGIPREIRTYGENAIILLDWNDPRILTFGDGHCNIVFDEGKFVLPMRIREDYKEFSI
AGETHHVKLGVPTQELMLDGRGYQCFFGGKPITVHLAGQPRTVSLDGKPPNVNIGPVANR
EFLAGKIQLVINAKKVVNLFLDAKPQRFFIDGKPFVIQFIDALRAVTINNIRFPVEFGGL
PLSISVRGYRRFLRFTSLPPGVVPGQVAIRGMESENQKLSSLPGSPAQDKVVETGMKPNR
GSPSLEMSHKPPVGYPQDKSSNKGVSHPSMGISAAPEGIFVPLQGPPSKIPTSQSLPQGI
PPQRPIMTGPPPQGPPPQGPPPQGPPPQGPPPHGPLHQGSLPTGPPPQVPSSHTPLLSQA
PPTVPLPAGMITVTSMVTQLPPQSMLTTSLPVTLPNMSHPPPSAIPGSYMTSQLPPSLIK
PSQPPPPVQLDLNALLENLTRTGLIDAKAQDKSKNKKDEIEKKKEEEEEEKERERDELIS
FEFMFNSENLRRRRKWLIESIYRGMQCSSCGLRYPPEQTLQYSHHLDWHFRQNRRQQEST
KKANTRKFYFSTQDWLQYEEIEDVEERVPSMFENEGLDEAIEAEESEEPSVAVSSEANLG
VCPTCHDTFSQFFHQETEEWRFHNAIQIDGINYHPACHQDMLRAEAAEKEKEEKEKQEKE
EEEKSKLEKEEEEEKGEEMPVEEEGNKEEEKEGGKEDEQEGEKADKDKQKAVDGDSEETP
MDSQTSVTEKVDAVSQEMQLPVQIKEEPMDVEEIDLDCVTSSSLPEGMMIKQEVKKEPPE
SNEDDILSRSPEEDDDIDALLSESNDDHMWETPIVSVNAAETDIASSIDGNTELSAPDTT
RTKSSMTKIKLNMSKPTLNNNNENNNEKKKNDNCILNSNNIEEEIGEFVPPPFTVDYDLK
PGFKGVELTEQPMEGRGVEISGLCSIM
NT seq
6024 nt
NT seq
+upstream
nt +downstream
nt
atgccggggccggacacatcagaagtggcggaagagtaccggtcgtccctgaaggatttg
accatcaactctaagccacttattaccatgttaacaatgctggctgatgaaaatagaccc
cacgccgccatcattgttaaagtcatcgaggaacatatccatgaggtgtctgggcctcag
aagctgccagtcatgtacttgattgactccatcatgaagaatgttggtcaggattatatc
aagatgtttggacacaacattatcagcacatttagttgtgtctttgaaaaggttgatgaa
agaacaaggaaaaaactttatgagttgagacacacatggaatgaagtgttcccaaagtct
cggctgtatggactagacgtcaaagtacagtcactagacccagcctggcccttgcccaca
ggtccagcaataacatcccagacctccagtaagcccaacatacacatcaaccccaacatc
attaagcctggtgtggtaaaggggtcgtcattaacgtcgtcatcttcgggtcacaagaac
aagaaggaactcgagatcctcaaacgggaagagcagattttggaattagagcgacaaaag
ttgatgttggaaaagaagaaaatacttttggaacagagtcgacaatccaaatcagaaact
aaggtggtgaagccagagcccgagaaaccaattgccaagaccatcgacgaccccagtata
tccagcgaacgccgctccgaattcctccgctcgtacaagataaagaaaaagtcacaaaat
aaggaagaatcacaggtgagctcaaccattcacgtagacccccggcgtgtccatcaggtg
ctccctgtagttgctgcatccagtccagttgtgacgcaagatcccagaaggattaatgaa
acgactcgggatcctaggttaacggttgaaaataatcgtgatccaagaattacacccgag
agttccagagaccccagactcaattctgaaagttctcgggacccaagactaaattcaact
ctctctacaaacagtacaaaggctgccaagccaagtgaggcgcaggtgacatcttcgcgt
gatcctcgggtggctgtaaaagaggtgaaagataaagataaagataaagtgaaagagaga
gagcagcggaaaagtaagaaagaaaccccagtaaaacccaaaaaagagaaggaagtaaag
ccttcaaagtcagaggcgcggtctacaaggtctctccatcgggcaaaagaaaaggagaaa
aaggagaaggaatctcctgtgtcatcttcgtcgctcaagtcaaacataacacacacaaag
aagtctctggaggctccggcacccgtcgtcgttaataattcgactacgtcattcaaaagc
aacaggaggaacaagcagcgcacctacaagcaacgcaccgagtcccctgtggaggagccc
aactcaccgcccaggaagaagcgttcatacgacgagattctttctgactcggatgatagt
gaccattaccaggctaatagacctaaccctgcattgtacaataaatctggtgagtatagg
ggtaggttggagtgggaaggagagagtgagaatgccctcgccagactctccctgatcagt
caagattcttcactttctgtaagactcgccccccaggacaaggagtcctttattttgctc
tgggagcctttcttttatgtaaattgtggatttatggatttttgtaatatcttttttaca
acattttacttgtcattattgctagcaaggttgaagaagtatggttctatatatgcagaa
gtgttaaaaaggttaaatgttttatattataaatcatatttatctgtaaaaatagcttac
tcaaagaaaccagaagtcagcagccccgccacatcaacaacaggtatcggggacactgac
taccgccagttcacctctcctcctaaacggcctgccaccaacgaaaatgtctctccgcca
aagaaggacaccattattgatgagaaactgactgagggtcaacaagagcttggactgttc
agcaagaaggacgtggactaccgccaactcttgcctcgtcctgggcttctacccacccca
ggactcccagcggcatttaagatgatggaccaagatgaccgtaaccctggcagtctggat
cactcgtctcgtgatcctctagcacctcttagcacttcagatcaagatgccaatatttct
catcctaaaggagtgttgggtcctccaggcattgatagtccagctgtgtgccccattgac
ccccgctcaaggaaacatagctttaacagccctcatgctgcatcttgggagaagttcagg
gagaagaacccagagtttaaagaataccagagacaggccagcatgtcagaggccgacaga
agtttcaacgtagacgaggaggatcaagatatgcctttctgtgagagccatagtggaccc
ccaatccgaggacgcagctttagaagtagagggtacgaagactccagtgatgcagcacag
ggaagacacagggatgggaggcggctatggggtgaagaagaagaagatggtgttaggttt
caagggcggagtaaagctgcacaggaaaactttaagatgatactgaagcaggccctggag
cagagggatcgtggtgagatcagtgagaatcagtaccagaacatggccaacaagctccgg
ctactaacagaacaagaacagatcagggaggcacgggagagggagagacttcaccccaga
agttcgtcacagtcacatttttcaggaaatggaagctggtcaagtggaggtgatagccca
gcttctgtgtcaagtagtggaccaccaccaggtgcaggctgcattggtccaggtgtctct
ggtctaagccctagtaatattcctagcctggggcgaggacgaggcagtcgcgatggccac
ttacccttcactacgggatcaaggggtggccggggtactttcatggggcctactgtctct
cctgcagcacgaggcatgggaagagctggtagaggaggacctggaatagaagatgatgga
tggggaagaggagggataagaggaagaggcagaaggggaagaggcggacaccaacaagat
gaccgtagttggcctgtgagagaatcagtactggaggatgagtggacaggtgaaccagat
ctaccttatgtggctgaagagactttgaaggccgtagctcgagatgctgaaactagaacc
attgatattgacggtatacctcgggagatacgtacatatggagaaaatgctattattctc
ctggattggaatgaccctcgtattctgacttttggagatggacattgcaatattgtcttt
gatgaaggaaagtttgttttaccaatgagaataagggaagattacaaggaattctcaatt
gctggagagactcatcatgtcaaacttggagtacctacacaagagttaatgctagatggt
agaggctatcagtgtttctttggtggcaagcccataactgttcacttggctgggcaacct
cgtactgtcagcctggacggcaagcccccaaatgtaaatataggtcctgtagctaacaga
gaatttcttgctggtaaaatccagcttgttataaatgcaaaaaaagtagtcaatctcttt
ttggatgccaagccacagcgtttcttcattgatggcaaaccttttgtcattcagtttatt
gatgctctcagggctgtaaccataaacaatatcagatttccagttgagtttggaggacta
cctctcagcatcagtgtgcgtggttacaggcgtttcctgcgattcacatcattgcccccg
ggtgttgttccaggacaagtagccattcgagggatggagagtgagaatcaaaagctatca
agcttgccaggtagtccagcacaagacaaggttgtagaaactggaatgaaacctaacaga
ggatcaccttctctggagatgtctcataaacctccagttgggtaccctcaggacaaatcc
tcaaacaaaggagtctcacatccttcaatgggaatatcagctgcaccagaaggaattttt
gtgcctctccaaggacctccttcaaagataccaacatcacagagccttccacaaggaata
ccaccacaaagacctataatgacgggtcctccaccacagggtccaccaccacaaggacct
ccaccacaaggacctccaccacagggtcctccacctcatgggcctctacatcagggctct
ctccctacaggcccaccaccacaagttccttcatcacatactcctctgctgtctcaggct
ccacctacagtacctctaccagcagggatgataacagtaacgagtatggtcacccagctg
cccccacaatcaatgctgacaacttctctacctgttacacttcccaacatgagtcatcct
cctcccagtgccatcccaggctcctacatgaccagtcagttaccaccatctttgataaaa
ccctcgcagccacctccacctgtgcaacttgaccttaacgctctcttggagaacttgacg
cgtactggcctcatcgatgccaaggctcaagataaatcaaagaataaaaaggatgaaatt
gagaagaaaaaggaagaggaagaggaagaaaaggagagagaaagggacgaattaatttcg
tttgaatttatgttcaactccgaaaatctccgaaggcgaaggaaatggctcattgaatct
atataccgagggatgcagtgttcatcatgtgggctacgttatcctcctgaacaaaccctc
cagtactcccatcatctggactggcatttccgacagaacagacgtcaacaagagtcaacc
aagaaagcaaacactcgcaagttctacttttccacccaagattggttacagtatgaggaa
attgaagatgttgaagagagagtgccgagtatgtttgaaaatgagggccttgatgaagcc
attgaggccgaagaatctgaagaaccgagtgtagctgtttcttcagaggcaaacttgggg
gtgtgtcccacttgccatgacaccttttcccaattcttccatcaggagacagaagagtgg
agattccataatgctatccaaattgatgggatcaactaccacccagcttgtcaccaggat
atgctaagagctgaggcagctgagaaggaaaaggaagaaaaggaaaaacaagagaaagaa
gaagaagagaagagtaagctggagaaagaggaggaagaagagaaaggagaagagatgcca
gtggaggaagaaggaaataaagaagaagaaaaagagggagggaaggaggatgaacaagag
ggagaaaaggccgataaagataaacagaaggctgtggacggagactcggaagaaactcca
atggattcccaaacttcagtgacagagaaggtggatgcagtgtcacaagagatgcagctg
cctgttcagatcaaggaggaaccaatggacgttgaagaaattgacctcgactgcgtaact
tcatcgtctctcccagagggtatgatgatcaagcaggaagtgaagaaggaaccccccgaa
tccaacgaagatgatatcctttccagatcacccgaggaggacgatgatatcgacgcgttg
ctctccgagagtaatgatgatcacatgtgggagacaccaatagtctcggtcaacgcagca
gaaacagacattgccagctctatcgatggaaacacggagctctccgccccggacacgacc
cgtacgaaatcgtccatgacaaagattaagttaaatatgtccaaaccaactcttaataat
aacaatgaaaacaataatgaaaagaagaaaaatgataactgcatacttaattccaataac
atcgaggaagaaattggagaatttgtaccgccgccattcactgtagactatgaccttaaa
ccaggtttcaaaggtgttgaactaactgaacaacccatggaaggtcgaggtgtagaaata
tccggtctctgctcaattatgtaa
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integrated database retrieval system
