Herpetosiphon aurantiacus: Haur_2656
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Entry
Haur_2656 CDS
T00614
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hau
Herpetosiphon aurantiacus
Pathway
hau03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Haur_2656
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hau03400
]
Haur_2656
Enzymes [BR:
hau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Haur_2656
DNA repair and recombination proteins [BR:
hau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Haur_2656
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
CarD_TRCF_RID
UvrB_inter
Helicase_C
ResIII
RecG_dom3_C
AAA_22
FAM199X
Motif
Other DBs
NCBI-ProteinID:
ABX05294
UniProt:
A9B116
LinkDB
All DBs
Position
3406156..3409779
Genome browser
AA seq
1207 aa
AA seq
DB search
MTDHVDTLLADIQALFASEPQLKAALAAAQPNTTRTITPVPSAARRVVAAIATRQHRSSL
LIAATPDAAVRMHADLTAWLGENVMLFPPTDTLPYEHMSADIGIVAQRLAVLGRLHASEP
ICVVASVKALMQPTMTPEEFQFATRLLRQGDQHDPRKLLAHWVSLGYRVGPTAEQPGDLS
QRGGIIDIFPPTSDRPIRLEFWDDQLESLRIYDPISQRSDKRVRQIQISPAHEIPFWRRT
EAIKRIEQLQIASLRREVQHEWATAREHLETGQRFEGRAFYAPFFRTPHEAAEAGLWQHL
PASAIILLSEEHELNAQGIELQSHADLVRSTQIENNELPPDFPFPLIAWTFIRRSIQRWS
CLNLSNQPIADDQNDSFVHEINTFSQAASYGGQTDRLFEDLRERLVGGERVVLISPQASR
LRELASQHNLALIGEEDGPDVDDPPFQSGTIIIRHGNLSGGFSSDPLRLTILSDSEIFGW
QQRRALSTRARKQRTESDRTAFLQSLKVGDYVVHIEHGIAQYEGLSRIEASGAEREFLVL
RYASGDKLYVPVDQVDRVSRYIGAGEGKPTLTRLGTSDWERAKRKVRADVEELATELLDL
YAARQLVEGFAYSSDTSWQRELEDSFPYTETDDQLRAIEEVKSDMENTRPMDRLICGDVG
FGKTEVALRAAFKAVQDGRQVAVLVPTTVLAQQHFETFSRRMQMFPVRIEMLSRFRSASQ
QKSITERIVKGEIDIVVGTHRILSSDIHFKQLGLVIIDEEQRFGVKDKERLKKLRHEIDV
LTLTATPIPRTMHMALSGIRDLSVIDTPPDDRMPIKTYVQPYNEMLVRDAILRELGRNGQ
AYFVHNRVQSIYTVANRLQKLVPEARIGVGHGQMPEKALEKVILQFFEGLFDVFVCTTII
ESGIDVPSANTMIIDDATTYGLAQLYQLRGRVGRSTQRGYAYMFYNPTKAMGEEAQKRLE
AIQEATELGAGFRIAMRDLEIRGTGNLLGAEQSGNITTIGFDLYSRLLSQAVERVREERK
RGQQQKSGEQKAQRARAVEALRRAAVVSARSSFSGDADDPVLPDAMVSIDLPINAYLPQN
YVDDEPLRLRVYQHIAEARSTRDIRMLRQELEDRFGPVPEPAARLLDLLTIKVLALQAGV
ISIISDDNEITVRLPKSVYLDREQLQRESPRGVVIGPQLARLDRRVLRDDWEVVLRQLLE
ALNKIGN
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atgacagatcatgttgatacgttgctagcagatattcaggcgctctttgccagcgagccg
cagcttaaagcagccttagcagcagcccaacccaatacaacccgcacaatcacgcctgta
ccaagtgcagcacgccgcgtcgtcgccgccatcgcgacccggcaacatcggagcagtttg
ttgattgctgctacacctgatgccgcagtacgcatgcacgccgacctaaccgcatggctc
ggcgagaacgtcatgctctttccaccgaccgatacgctgccctacgagcatatgtcggcg
gatattgggattgtagcgcaacgtttggcagtgctcgggcgcttgcatgctagcgaaccg
atctgcgtagtcgcttcggtcaaagccttgatgcaacccaccatgacccctgaagaattt
cagtttgccacgcgcttgttgcgccaaggcgaccagcatgatccacgcaagttgctcgct
cactgggtcagtttgggctatcgggttggcccaaccgccgaacaaccaggcgatctcagc
cagcgcggcgggattatcgatatttttccgccaaccagcgatcgcccaattcggctcgaa
ttttgggatgatcagctcgaaagtttgcgtatttacgacccaatctcgcagcgctcagat
aaacgggtgcgccaaattcaaatcagcccagcccatgaaattccgttttggcgacgaacc
gaggcgatcaaacggatcgagcagttgcaaattgccagcttgcgccgcgaagtacagcac
gaatgggccaccgcccgcgaacatcttgaaacaggccagcgctttgaagggcgggccttt
tatgccccgttttttcgcacgccccacgaagcagccgaggctgggctatggcaacatttg
ccagcctcagcaatcatcctgctttccgaagagcatgaattgaatgcccaaggcattgaa
ttgcaaagccatgccgatttggtgcgcagcactcaaattgaaaataatgaattaccgccc
gattttccgtttccattaatcgcttggacgtttattcggcggtcgattcaacgctggagt
tgcctcaacctcagcaatcagcccatcgccgatgatcaaaacgatagctttgtgcatgaa
attaatacatttagccaagctgcatcctatggcggccaaactgatcggctgtttgaggat
ctgcgcgaacgcttggttggtggcgaacgagtggtgttgatttcaccacaggctagtcgg
ctgcgcgaattggctagccaacacaatttagccctaattggcgaagaagacggccccgat
gttgacgatccgccatttcaaagcggcacgatcatcattcgccatggcaatttatcaggt
gggtttagcagcgatccattgcgcttaacgattttaagcgatagtgagatttttggctgg
cagcaacgccgagcactttcaactcgtgcccgcaaacagcgcaccgaaagcgatcgcacg
gcctttttgcaatcgctcaaagttggcgattatgtggtgcatatcgagcatggcatcgct
caatacgagggtttatcacggatcgaggctagcggcgctgaacgcgagtttttggtgctg
cgctacgcttcgggcgataaattatatgtgccggtcgatcaggtcgatcgggtatcacgc
tatatcggcgcaggcgaaggcaagccaaccctcacccgtttgggcacctcagattgggag
cgtgccaagcgcaaagtgcgggccgatgttgaagaactcgcgactgaattgctcgattta
tacgcagctcgtcagttagtcgagggctttgcctatagcagcgacacctcgtggcaacgc
gaactcgaagatagttttccctataccgagaccgacgatcaactgcgggcaatcgaagaa
gtcaaaagcgacatggaaaatacccgcccaatggatcggctgatctgtggcgatgtgggc
tttggcaaaactgaagttgccttacgcgccgccttcaaagcggtgcaagatggccgccaa
gttgcggtgctggtaccaaccaccgtcctagcccaacaacattttgaaaccttctcgcgg
cgcatgcaaatgtttccggtacggatcgaaatgctttcacgctttcgctcagcatcacag
caaaaatcaatcaccgaacggatcgtcaagggcgaaattgatattgtggttggcacgcat
cggattttatccagcgatattcattttaagcaactcggcttggtgattatcgacgaagaa
caacgcttcggcgttaaagataaagagcgacttaaaaaattgcgccatgaaattgatgtg
ctgacattaactgccacgccgattccgcgcacaatgcacatggctttgtcgggtattcgc
gatttaagcgtgatcgacacaccgcccgacgatcgcatgccaatcaaaacctatgtgcag
ccctacaacgaaatgttggtacgcgatgcgattttgcgcgaattagggcgtaatggtcaa
gcctattttgtgcataatcgggtgcaatcaatttatactgtcgccaatcggctgcaaaaa
ctcgtgcccgaagcccgaatcggggttggccatggccaaatgcccgaaaaagcgctcgaa
aaagttattttgcaatttttcgaaggcttgtttgatgtgtttgtgtgtacgacgattatc
gaaagcggcatcgacgtgcccagcgccaacaccatgattattgatgatgcaacaacctat
ggactagcccaactctatcaattgcgggggcgagttggtcgctcaacccagcgcggttat
gcctatatgttctacaaccccaccaaagccatgggcgaagaagcgcaaaagcggcttgag
gcgattcaagaggccaccgaacttggggcaggctttcgcatcgccatgcgcgacctagaa
attcgtggcactggcaatttgcttggagctgaacaatcgggcaatatcaccacgattggc
tttgatctctactcgcgcttgctttcgcaggcagtcgagcgcgtgcgtgaagaacgcaaa
cgcggccaacagcaaaaatctggcgaacaaaaagcccaacgcgctcgtgcagtcgaggcc
ttgcgccgagcagcagtggtttcagctcgcagcagttttagcggcgatgccgatgatcca
gtcttgcccgatgcgatggtcagcattgatctgccgattaatgcctacttgccgcaaaat
tatgttgacgatgaaccgctgcgtttgcgcgtctatcaacatattgccgaagcacgttca
acccgcgatattcgtatgttgcgccaagaattagaagatcgctttggacctgtgccagag
ccagccgcccgcctgctcgatttgctgacaatcaaagttttagccttacaagctggcgtt
atttcgatcatttctgatgataatgaaattactgtgcgcttgcccaagagcgtctatctt
gatcgcgagcaacttcagcgcgaatcaccacgtggcgtagtaattggcccgcaattggcg
cggcttgatcggcgggtattgcgcgatgattgggaagttgtgttgcggcagttgctcgaa
gcactcaacaaaattggcaattaa
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