Haemophilus sp. oral taxon 036: C3V42_08580
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Entry
C3V42_08580 CDS
T05707
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
hay
Haemophilus sp. oral taxon 036
Pathway
hay03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
C3V42_08580 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hay03400
]
C3V42_08580 (recB)
Enzymes [BR:
hay01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
C3V42_08580 (recB)
DNA repair and recombination proteins [BR:
hay03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
C3V42_08580 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
ResIII
AAA_12
AAA_11
AAA_25
DUF1877
Motif
Other DBs
NCBI-ProteinID:
AVM60667
LinkDB
All DBs
Position
complement(1792887..1796522)
Genome browser
AA seq
1211 aa
AA seq
DB search
MVETIPLNPITLPLNQISLIEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVV
TFTEMATEELKKKIRERITDAIDKLTAFAETKDKSSFKNDEFLTALCHDLDIFEAIHRLK
LAEQNMDLAAIYTIHGFCRRMLMQYAFHSGIHFNLELIKDQSDLLVRFANEFWREHFYPL
DFESANFIATELVSPANVLSLLKADLGKDLQVEIENKQALSVPIQIFLPQYLGGYQKALN
KLKAFWLKSADEISAIITNELEKNYPKDQLKSLNRKKYQVKRLGDWINKINQWSNNPRDY
QINTTLKDYFLQSSIEKNCEESTDKNKDKKTATPFYFPIFAELEKRVNALMTPDLLSKLT
LYHYRQGLQQKLLDYKLNHQEKSFDDLLRLLCEALQGAQGDELAEMIRFQYPFAMIDEFQ
DTDSKQYSIFSKIYRDNPEKNTGFIMIGDPKQAIYRFRGADIFTYLKASDEAQSRFELTK
NYRSEKNLVDGVNALFDFPQSPFIYQNINFTAVDSRDDHLRFYLNGKAEPAYRFYLTESD
KVNKTEMAKICAISIQHWLKSAAENQAVFQNEDTCKTLQAANIAVLVRDKNEAALVKNEL
QKLGIASVYLSDQNSVFDSNVAKELAWVLKACLNVAERPILNAIATALFGLNAADIHQIQ
QNEADWQRWADSFAQYQQTWQRQGILAMLHQILLEQGISERLLSQTTGERDLTDFLHLAE
ILQQAATLHESEAALLSWFEKQIQGEGRQEAQIRLESERQLVKIVTIHKSKGLEYDLVWL
PFLAVPSKDPSKKDINIYYSKERDETLWDMENRNLNALYEETFAEELRLLYVALTRAKYQ
MAFALPSQFDKKWNALHYVLSQGEIGKEINLSDSKNTETLLQTFKEKMQDNVEICTKPNL
EALPALSTNTKNDELKAAEFTGNIEQDWRITSFTSIEQAHRRQHYFTESAGKKHSVFDDI
KDYDSQNAIEISTALLNENESNILDLPRGKQVGTVLHRHFENCYFSDLANTEEIDKLRQS
LQLDETFTEPLQNWLQQISHTPLSNEIGIALADLANKDCIKEMPFYLAIREHFDVEAFNR
ALKAHHHLPSEPLQFEQIQGMLRGSIDLVFRHNGKYYLVDYKSNFLGSTLSSYNQEALKK
EMLHSHYDWQYLIYTLALHRYLQSVVPHYDYSRDFGGVFYLFLRGMNGEPQSGVFYDRPS
VELITELDGVF
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atggtcgaaacaatcccactaaatcccatcacgctgcctttaaatcaaattagcttaatc
gaagcgtccgctggtacggggaaaacctacactattggttctttatatctccgactttta
ttaaaggctggagaaaataatttttctcgtccattaaatgtggaagaaattctggtggta
acatttacggaaatggcgacagaagaactcaagaaaaaaattcgtgagcgtataacagat
gcgattgataaactcacagcctttgcagaaaccaaagataaatcctcatttaaaaatgat
gaatttcttaccgcactttgtcatgatttagatatttttgaggcaattcatcgcttgaaa
ttagctgagcaaaatatggatttggcggcgatttataccattcacggtttttgtcgccgt
atgttgatgcaatatgctttccattctggcattcacttcaatttagaattaattaaagat
caatctgatttgttagttcgttttgctaatgaattttggcgagaacatttttatccgttg
gattttgaatctgcgaattttatcgcgacagaattagtatcaccagcaaatgtgttgtct
ttgttgaaagcggatttaggtaaagatttgcaggtggagattgaaaataaacaggcgtta
tctgtaccaatacaaatctttttaccgcaatatcttggtggttatcaaaaagcgttgaat
aaattaaaggcattttggttaaaaagtgcggatgaaatttcagcgattattaccaatgaa
ctggagaaaaattatccaaaagatcagttgaaatcgttaaatcgtaaaaagtaccaagta
aagcgtttaggggattggattaataaaattaatcaatggtcaaataatcctagagattat
caaattaataccacattgaaagactatttcctacaatcatctattgagaagaattgcgaa
gaatcaacggataaaaataaagataaaaaaaccgcaacgcctttttatttcccgattttt
gcagagcttgaaaagcgcgttaatgccttaatgacaccagatttactaagcaaactcact
ctttatcattatcgccaaggcttacaacaaaaacttttagactataaacttaatcaccaa
gaaaaatcctttgatgatttattgcgtttgctttgcgaagctttgcaaggtgcgcaagga
gatgaattagcggaaatgattcgtttccaatatccttttgcgatgattgatgaatttcag
gatacagattcaaaacagtactctattttttcaaaaatttatcgtgataatccagaaaaa
aataccggttttattatgattggtgatccgaagcaggcgatttatcgtttccgtggcgca
gatatttttacttatctaaaagcatcggatgaagcccaatctcgctttgaactcactaaa
aattatcgttcagagaagaatctggttgatggcgtcaatgcgttgtttgattttcctcaa
tcgccatttatttatcaaaatattaactttactgctgttgattctcgtgatgatcatctg
cgattttatttaaacggtaaggcagaacctgcttatcgtttttatttaactgaaagtgac
aaagtgaataaaactgaaatggcaaaaatatgtgctatttctattcaacattggctaaaa
agtgcggcagaaaatcaggcagtttttcaaaatgaagatacttgtaaaaccttgcaagcg
gcgaatattgccgtattggtgcgtgataaaaatgaagcggctttagtaaaaaatgaattg
caaaaattggggatcgcgtcagtttatctttctgatcaaaatagtgtatttgatagcaat
gttgcgaaagaattagcttgggtgcttaaagcctgtttgaatgtggcagaacgtccaatt
ttgaacgcaattgcgaccgcactttttggcttaaatgcagcggatattcatcaaattcag
caaaatgaggcagactggcaacgttgggcagatagctttgctcaataccaacaaacttgg
caacgccaaggaatattggcaatgttacatcaaattttattggagcaaggcatttcagag
cgattattaagccaaacaacaggcgagcgagatttaacggatttcctacatttggcagaa
attttacaacaagctgccacgctacacgaaagtgaagcggcattactcagttggtttgaa
aaacaaattcaaggcgaaggtcgtcaagaggctcaaattcgtttagaaagtgaacgccag
ttggtaaaaatagtgacaatccataaatctaaaggcttagaatatgatttagtttggcta
ccatttttagctgtgccgagcaaagatccaagtaaaaaagacatcaatatttattattct
aaagaacgagatgaaaccttatgggatatggaaaatcgtaatttaaacgcactttatgaa
gaaacgtttgcggaggagttacgtttactttatgtggctttaacccgtgccaaatatcaa
atggcattcgctttgcctagtcaatttgataaaaaatggaatgccttacattatgtatta
agccaaggcgaaataggcaaagaaataaatttgtcagattctaaaaataccgagacgttg
ttgcaaacctttaaagaaaaaatgcaagataatgtggaaatctgcactaagccaaaccta
gaggctttgccggctttatcaaccaatacaaaaaatgatgagcttaaagccgcagaattt
acaggcaatattgaacaagattggcgaataaccagttttacttcaattgaacaagcacat
cgccgccagcattatttcactgaaagtgcgggtaaaaaacactctgtttttgatgatata
aaagattacgatagccaaaatgctattgaaatttcgaccgcacttttaaacgaaaatgaa
tcaaacattttagatttaccacgaggtaaacaagtcgggactgtattgcatcgccatttt
gaaaattgctatttttctgacttggcaaatacagaagaaattgacaaattacgacaatcc
ttacagttagatgaaacctttacagaaccgctacaaaattggctacaacagatttcacat
acgccactttctaatgaaataggaatagcattagctgatttggcaaataaagattgcatt
aaagaaatgccattttatctggctattcgggaacattttgatgttgaagcgtttaatcgt
gcgttgaaagcccatcatcatttaccaagcgagccacttcaatttgaacaaattcagggt
atgctgagaggttcgattgacttagttttccgccataatgggaaatattatcttgttgat
tataaatctaatttcttaggttcaactctgtcctcttacaatcaagaggcattgaaaaaa
gaaatgttacacagtcactatgattggcaatatttaatttatacgctggcattacatcgt
tatttacaaagcgttgtgcctcattacgattattcgcgagatttcggcggggtattttat
cttttcttacgtggaatgaacggagagccacaatctggcgtattttatgatcgtccaagc
gttgaattaatcacagaattagacggggtgttttaa
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