Hyphomonadaceae bacterium UKL13-1: AEM38_15145
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Entry
AEM38_15145 CDS
T04338
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
hbc
Hyphomonadaceae bacterium UKL13-1
Pathway
hbc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hbc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AEM38_15145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hbc03021
]
AEM38_15145
03019 Messenger RNA biogenesis [BR:
hbc03019
]
AEM38_15145
Transcription machinery [BR:
hbc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AEM38_15145
Messenger RNA biogenesis [BR:
hbc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AEM38_15145
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_22
AAA
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
AMS30475
UniProt:
A0A7U4TNI4
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All DBs
Position
3274522..3275817
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AA seq
431 aa
AA seq
DB search
MSEELSIDAPPRRSTLQELKTRTPTELVVLAESLEIDGASNLRTQDLLFAILKAQAERGS
EIGGGGVLEVLPDGFGFLRSPESNYLSGPDDIYVSPQQIRRHGLRTGDTVEGPVKAPKDG
ERYFALSKVDTINFTDPEQARHKVNFDNLTPLYPDERLHLEIQDPTRKDRTGRVIDIVAP
IGKGQRALIVAPPRTGKTVILQNVAKSIEINHPEVYLIVLLIDERPEEVTDMKRSVKGEV
VSSTFDEPATRHVQVAEMVIEKAKRLAEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTG
GVDANALQRPKRFFGAARNLEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNSEIILDR
KVSDKRVFPAIDIIKSGTRKEELLVPKEHLPKMYMLRRILNPMGTMDAMEFLLDKLKQTK
NNDDFFQSMNT
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaggaattgtcgatcgacgcgccacctcgccggtccaccctacaagaattaaag
acccgtacccccactgaattggtggtactggcagaatccctggaaattgatggcgcatct
aacttgcgcacccaagatcttttgtttgctattttgaaggcgcaagccgaacgtggctct
gaaattggcggcggcggcgtgttggaagtgttgccagacggcttcggcttcttgcgttcg
ccggaatctaactatctctccggcccagacgacatttatgtctccccccagcaaatccgt
cgtcacggcttacggaccggtgacacggtcgaaggccccgtcaaagcgcctaaagacggc
gagcgctattttgctctctccaaagttgatacgatcaacttcacggatccagagcaggcc
cgccataaggtcaatttcgacaacttgaccccgctctatccagacgagcgcttacatctg
gaaatccaagatccaacgcggaaggaccggacgggccgcgtcatcgatattgttgcgcca
atcggtaaaggccagcgcgccttgatcgtggcaccgccacgcaccggtaaaacagtcatt
ctgcagaacgtcgccaagtcgatcgagatcaatcacccagaagtttatctgattgtattg
ttgatcgacgaacggcctgaagaagtcaccgatatgaagcgctcggtaaagggcgaagtc
gtatcctcaaccttcgacgagccagcaacgcgccacgtgcaagtcgctgaaatggtgatc
gagaaggccaagcgcttggccgagcatggccgtgacgtcgtcatcctgcttgactcgatt
acgcgtctaggccgcgcctacaacacggttgtgccgtcctcgggtaaggttctgaccggt
ggtgtggatgcaaacgcccttcagcgcccgaagcggttcttcggtgctgcccgtaatctg
gaagaaggcggctcgctgaccattatcgcgacggcgttgattgaaaccggctcgcgcatg
gatgaagtcatcttcgaagagttcaaaggcacgggtaactccgaaatcattctggaccgc
aaggtatctgacaagcgcgtcttcccagccatcgacatcattaagtcgggtactcggaag
gaagagcttttggttccaaaagagcatctgccgaaaatgtacatgctgcgacgtatcctc
aaccctatgggtaccatggatgcgatggaattcttgctcgataagctcaagcagaccaaa
aataatgatgactttttccagagtatgaacacataa
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