Halogeometricum borinquense: Hbor_11550
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Entry
Hbor_11550 CDS
T01359
Name
(GenBank) AAA family ATPase, CDC48 subfamily
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
hbo
Halogeometricum borinquense
Brite
KEGG Orthology (KO) [BR:
hbo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hbo03019
]
Hbor_11550
03009 Ribosome biogenesis [BR:
hbo03009
]
Hbor_11550
04131 Membrane trafficking [BR:
hbo04131
]
Hbor_11550
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hbo04147
]
Hbor_11550
Messenger RNA biogenesis [BR:
hbo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
Hbor_11550
Ribosome biogenesis [BR:
hbo03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
Hbor_11550
Membrane trafficking [BR:
hbo04131
]
SNARE
SNARE associated proteins
Others
Hbor_11550
Autophagy
Aggrephagy
Other aggrephagy associated proteins
Hbor_11550
Exosome [BR:
hbo04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Hbor_11550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
CDC48_2
AAA_2
AAA_5
AAA_14
AAA_22
TIP49
nSTAND3
AAA_33
RNA_helicase
AAA_28
AAA_7
AAA_3
IstB_IS21
DUF815
AAA_18
Mg_chelatase
NB-ARC
AAA_25
AAA_17
Parvo_NS1
Sigma54_activat
TsaE
AAA_30
SLFN-g3_helicase
AAA_24
AAA_11
ATPase
AAA_19
ABC_tran
PhoH
bpMoxR
Zeta_toxin
ATPase_2
NACHT
NTPase_1
Bac_DnaA
Vps4_C
ATP-synt_ab
Molydop_binding
Motif
Other DBs
NCBI-ProteinID:
ADQ66745
UniProt:
E4NQQ7
LinkDB
All DBs
Position
complement(1073264..1075528)
Genome browser
AA seq
754 aa
AA seq
DB search
MKLIVKPLKQKDAGRGLAAIDRAAAEELGLEGGDYIRIEGDGGTAIARVWPGYPEDRGSG
VVRIDGRLRQQANVGIDDRVQVEPADVKPAKTVSIALPQNLRIGGNVGTYIRDKLSGQPV
TKGQSIQLPLGFGFMASSNQSVPVKIASTQPDGTVVITDSTEVQISQKPAEEIHGAEGRD
TSEGPSVTYEDIGGLDRELEQVREMIELPMRHPELFKRLGIDPPKGVLLHGPPGTGKTLI
AKAVANEIDASFHTISGPEIMSKYYGESEEQLREIFEDAEENAPAIVFIDEIDSIAPKRG
EAGGDVERRVVAQLLSLMDGLDERGEVVVIGATNRVDAIDPALRRGGRFDREIEIGVPDK
EGRKEILQVHTRNMPTAEGVDLDEYAEITHGFVGADIESLAKESAMNALRRIRPQLDLDE
DEIDTDVLESLEVREDDFKDAMKGIEPSALREVFVEVPDVTWENVGGLENTKERLRETIQ
WPLEYPEVYEKMDMQSAKGVLLYGPPGTGKTLLAKAVANEADSNFISVKGPELLNKYVGE
SEKGVREIFKKARENAPTVVFFDEIDSIAIERGQSSGDSGVSERVVSQLLTELDGLESLE
DVVVIATSNRPDLIDSALLRPGRLDRHIHVPVPDEEARHAIFEVHTEHKPLADDVDLDQL
ARKTEGYVGADIEAVCREASMAASREFINSVEPEEVEESIGNVRVTMDHFEAALDEVNPS
VTQETRRRYEEIEERFQKSDVERDPEEKVGRTFQ
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcattgtcaaaccactgaagcagaaagacgctggtcgtggacttgcggcgatt
gatcgcgctgccgccgaagaactcggtctcgaaggcggcgattatatccgcatcgagggt
gacggcggcaccgccatcgctcgtgtgtggcccggttaccccgaggaccgcggcagtggc
gtcgttcgtatcgacggccgacttcgccaacaggcgaacgtcggcatcgacgaccgcgta
caggtcgaacccgcggacgtaaagcccgcaaaaaccgtctctatcgccctgccgcagaac
ctccgtatcggcggcaacgtcgggacgtacatccgcgacaagctctccggacagcccgtc
acgaaggggcagagcatccaacttccccttggattcggattcatggcctcctcgaaccag
tcggtgccggttaaaatcgcctccacgcaaccggacggcaccgtcgttatcaccgactcc
acggaggtccagataagccagaaacccgcagaggagattcacggcgctgagggtcgtgac
accagtgagggcccgtcggtaacctacgaggacatcggcggcctcgacagagaactcgaa
caggtccgggagatgatcgaacttccgatgcggcacccggaactgttcaagcgcctcggc
atcgacccgccgaaaggcgtgctcctgcacggtccgccgggcaccgggaagacgctcatc
gccaaggccgtcgccaacgagatagacgcgtccttccacacgatctccggtccggagatc
atgtcgaagtactacggcgagtccgaagagcaactccgcgagatattcgaagatgccgaa
gagaacgcgccggccatcgtcttcatcgacgagatcgactccatcgcacccaagcgcggt
gaggctggcggtgacgtggaacggcgcgtcgttgcccaactcctctcgctgatggacggg
ctagacgaacgcggagaagtcgtcgtgatcggcgcgacgaaccgcgtcgacgccatcgac
ccggcgcttcggcgcggaggccggttcgaccgcgaaatcgagatcggcgtccccgacaag
gagggccgtaaagagattctacaggtccacacgcggaacatgccgaccgccgagggcgta
gacctcgacgagtacgcggagattacgcacgggttcgtcggcgcggacatcgagagcctc
gccaaggaatccgcgatgaacgctctacggcgtatccgcccgcagttggacctcgacgag
gacgagatcgataccgacgtcctggagtcgctagaggtccgcgaggacgacttcaaggac
gcgatgaagggtatcgaaccctccgcgctccgcgaagtgttcgtcgaagttcccgacgtg
acgtgggagaacgtcggtggcctcgaaaacaccaaagagcgcctccgcgagaccatccag
tggccgctggagtaccccgaggtgtacgagaagatggacatgcagtcggcgaagggtgtc
ctgctctacgggccgccggggacggggaagacccttctggcgaaggctgtcgccaacgag
gccgattccaacttcatctccgtgaaggggccagaactgctcaacaagtacgtcggcgag
tccgagaagggtgtccgtgagatattcaaaaaggcgcgcgagaacgccccgaccgtggtg
ttcttcgacgagattgactctatcgccatcgagcgcggccaaagctccggtgattcgggc
gtctccgaacgcgtcgtctcgcaactcctgaccgaactcgacgggctggagtcgctcgaa
gacgtggtcgtcatcgccacctccaaccggccggatctcatcgattcggcgcttctgcgt
ccggggcgactcgacaggcacatccacgtgcctgttcccgatgaggaggcacggcacgcc
atcttcgaggtacacaccgagcacaaaccgctggcagacgacgttgatctcgaccaactc
gcccgcaagaccgagggctacgtcggggccgacatcgaagcggtctgccgcgaggcatcg
atggctgcgagtcgggagttcatcaacagcgtggaacccgaagaagtcgaagagtccatc
ggcaacgtccgcgtcaccatggatcatttcgaggcggcactcgacgaagtcaacccgagc
gtcacccaagagacgcgccgtcggtacgaggaaatcgaagagcggttccagaagagcgac
gtcgaacgcgatcctgaggaaaaagtcggccggacgttccagtaa
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