KEGG   Halogeometricum borinquense: Hbor_16640
Entry
Hbor_16640        CDS       T01359                                 
Name
(GenBank) ATP-dependent DNA ligase I
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
hbo  Halogeometricum borinquense
Pathway
hbo03030  DNA replication
hbo03410  Base excision repair
hbo03420  Nucleotide excision repair
hbo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hbo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Hbor_16640
   03410 Base excision repair
    Hbor_16640
   03420 Nucleotide excision repair
    Hbor_16640
   03430 Mismatch repair
    Hbor_16640
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hbo03032]
    Hbor_16640
   03400 DNA repair and recombination proteins [BR:hbo03400]
    Hbor_16640
Enzymes [BR:hbo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Hbor_16640
    6.5.1.6  DNA ligase (ATP or NAD+)
     Hbor_16640
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Hbor_16640
DNA replication proteins [BR:hbo03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    Hbor_16640
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     Hbor_16640
DNA repair and recombination proteins [BR:hbo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Hbor_16640
   NER (nucleotide excision repair)
    Other NER factors
     Hbor_16640
   MMR (mismatch excision repair)
    Other MMR factors
     Hbor_16640
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase EccE
Other DBs
NCBI-ProteinID: ADQ67232
UniProt: E4NLM9
LinkDB
Position
complement(1591375..1593231)
AA seq 618 aa
MQFAEFAARASEIEAEPADLATVALVRDLFCDAGDDLPVVTRFVQGRVFPAWDSTTLDIG
PRLLREAIARAAGQNVTADDVEDRLADAGEIGSVAAAYDFGGQQGLAAFSGGTNDGLTVN
EVDETLRDLAAASGPGSEDRKLNTLFGLFNRASSSEAKYLARLVLGEMRIGVGAGTVRDA
VAEAFLADFESATEESEDDEGGPKDDDAEDRSKDDDAEDRPKDDDTEDTADDADEPTTYA
TDEQLAAVERALQVSNDYGMVAVTARDEGKEGLKAVHLEVGRPVQAMLAQAGTVTDALDE
WDEAAVERKFDGARVQVHVAPDDASADDGEDVSLYSRNMDDVTDALPEIVEFVEDHVDVP
VILDGEVVAVDDDGAPLPFQEVLRRFRRKHDVGRMREEVRVELHAFDCLHADSEDLLDAP
VTERHARLAEVLADTNAVSDLLVSEDADEIAAFEEASLDAGHEGIMLKNPDSTYSPGNRG
KNWLKRKPDVETVDLVVTGAEWGEGRRANHLGTFLLSARDESGDGDYATIGKVATGITDE
ELAELSDLLEPEIVSEDGQTVELNPSVVFEVGYEEIQRSPTYSSGYALRFPRFIAVREDK
TPDDADSLDRIERLAESQ
NT seq 1857 nt   +upstreamnt  +downstreamnt
atgcagttcgccgagttcgccgcgcgggcgtcggaaatagaagccgaacccgcagacctc
gccaccgtcgcgctagtccgtgatctgttttgcgacgccggagacgacctccccgtcgtc
acacggttcgtccaaggccgcgtcttcccggcatgggactcgacaacgctcgatatcggg
ccgcgactcctccgcgaggccatcgcgcgcgcggccgggcagaacgtcacggccgacgat
gtcgaggaccgactcgccgatgcaggtgaaatcggcagcgtcgctgcggcgtacgacttc
ggcggccaacagggactcgccgcgttctctggcggcactaacgacggtctgacggtcaac
gaggtggacgaaacgcttcgtgacctcgcggccgcctccggacccgggagtgaggatcga
aagctgaacacgttgttcggcctgttcaaccgcgcgagttcgtcggaagcaaagtatctc
gcacgtctcgtcctcggcgagatgcgtatcggcgtcggagcgggaaccgtccgcgacgcc
gttgccgaagcgttcctcgctgacttcgaatcggcgacggaggagagcgaagacgacgaa
ggcggaccgaaagacgacgatgccgaagacagatcgaaggacgacgatgccgaagataga
ccaaaggacgacgataccgaagacactgcggacgacgccgacgaaccgacgacgtacgcg
accgacgagcaactggccgccgtcgaacgcgccctccaagtgtcgaacgactacgggatg
gtcgccgtcacggcccgcgacgaaggcaaagaagggctgaaagcagttcatctcgaagtc
ggccgccccgtgcaagcgatgctggcacaggcagggacagtgaccgacgccctcgacgaa
tgggacgaggcggcggtggaacgaaagttcgacggcgcgcgcgtgcaggtccacgtcgca
cccgacgacgcgtccgcggacgacggcgaagacgtgtcgctgtactcccgtaatatggac
gatgtaacggatgcgcttcccgaaatcgtagagttcgtggaggatcacgtggacgtgccg
gtgatcctcgacggcgaggtggtggcggtagatgacgatggcgcaccgcttccgtttcag
gaggttctccgccggttccgtcgcaaacacgacgtgggtcggatgcgcgaagaggtgcgc
gtcgaactccacgcgttcgactgtctacacgccgacagcgaggacttgctcgatgcgccg
gtgacggaacgacacgcccgactcgcggaggtgctggcggacaccaacgccgtctcggac
ttgctcgtctccgaggacgccgacgagatagccgccttcgaggaggcgtcgcttgacgcc
ggccacgaagggatcatgctgaaaaaccccgattcgacgtactcgcccggaaatcgcggg
aagaactggctgaaacgaaagcccgacgtagagacggttgacctcgtcgtgacgggtgca
gagtggggagagggccgccgcgcgaaccaccttggaacgttcctcctctccgcgcgcgac
gagagcggcgacggcgactacgccactatcgggaaggtagcgacgggcatcaccgacgag
gaactggccgagttgtccgatctcttggaaccagaaatcgtcagcgaggacggacagacg
gtcgaactgaatccctcggtcgttttcgaggtcggctacgaagagatacaacgctcgccg
acgtactcatcggggtacgcgcttcggttcccgcgctttatcgccgtccgagaggacaag
acgccggacgatgccgactcgctggatcgaatcgagcggttggccgagtcgcaatga

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