Hippocampus comes (tiger tail seahorse): 109512614
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Entry
109512614 CDS
T04969
Name
(RefSeq) collagen alpha-1(IX) chain-like isoform X1
KO
K08131
collagen type IX alpha
Organism
hcq
Hippocampus comes (tiger tail seahorse)
Pathway
hcq04510
Focal adhesion
hcq04512
ECM-receptor interaction
hcq04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hcq00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109512614
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109512614
09142 Cell motility
04820 Cytoskeleton in muscle cells
109512614
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
hcq00535
]
109512614
Proteoglycans [BR:
hcq00535
]
Extracellular matrix (ECM) proteoglycans
Others
109512614
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
109512614
NCBI-ProteinID:
XP_019720039
LinkDB
All DBs
Position
Unknown
AA seq
638 aa
AA seq
DB search
MDLSGSCRLLLLLQALLIASAQRGPVGPRGPPGPPGIAGVPGVDGIDGERGVDSTVNGGP
GPAGENGKDGAGGAAGLPGADGPVGPPGDRGLAGVKGAKGDPGPPGPAGEPGVGPGGLDG
IPGTDGLPGEMGKAGAPGARGTRGQVGATGAAGPRGPPGVYRGQELCPSACPAGLSGHSG
LPGMKGHKGVKGESGEPGRQGHKGEEGEQGAQGDVGSQGLPGPAGAKGLAGITGSKGERG
PRGKPGDAGPQGQRGAPGDFGQRGAIGETGPSGVQGDGGPSGIRGPPGPKGEAGLPGPDG
REGIPGLPGSKGLPGKNGAPGDAGLQGLPGVPGSYGQKGTSGPKGATGDPGVAGPMGSPG
KQGERGEQGEAGPVGPRGGPGERGERGPGGPPGASGPRGGKGDVGLPGLPGPAGYRGLKG
QRGSVGPDGPKGEQGPPGAEGTPGYRGDLGDQGEPGEKGATGPPGETGNRGPEGGRGQQG
KEGEPGQAGPRGMQGDMGVPGLPGAQGPAGKSPTDTHIKQVCMRVMQEQLAQLAASLSRP
ESGVSGLPGPPGPPGPPGPSGENGFPGHTGSRGLPGLKGPPGPLGRKGPKGDQGERGARG
PTAHGPKGIAGTPGLPGKPQLGARQTLGNESIFRCWLL
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggatctgtccgggagctgccgcctgctcctcctgctgcaagcgcttctcatcgcctcc
gctcagaggggcccggtgggtccaagaggccccccgggaccacccggaatcgccggcgta
cccggcgtggacggcatcgatggcgagagaggagtggactccacagtcaacggcggaccg
ggtcctgccggggaaaacggcaaagacggagctggcggggctgcgggacttccgggagca
gacggacccgtggggcctcccggagatcgaggcctagcgggcgtaaaaggagcaaaaggg
gatcccggaccaccgggcccagccggtgagccgggcgtgggaccaggcggcttggatggc
atcccggggaccgacggcctcccaggagaaatgggcaaagcgggcgcccctggagccaga
ggcacgagggggcaagtgggcgctacgggagccgcgggacctcggggtccgccgggagtt
tatcggggccaagaactgtgccctagtgcttgtccagctggactgtcaggacactctgga
ctgcctggcatgaaaggtcacaagggtgtgaagggtgagtccggagagcccggtcgacaa
ggacacaagggagaggagggtgaacaaggggcacagggagacgtcggatctcaaggactt
ccgggcccggccggagccaagggcctggcgggaatcacgggctccaaaggcgaacgggga
ccccgagggaagccgggggacgcgggacctcaaggccaacgcggagctccgggggacttt
gggcagagaggagccatcggggagaccggacccagcggggtgcagggtgacggaggccct
tccggaatcagaggaccgccgggaccaaagggagaagctggccttcctggtccggacggg
cgggaaggaatccctggacttcctggttcaaagggtcttcccggcaagaacggagctccg
ggtgacgccggactacaaggtcttcccggggttccgggttcttacggccaaaaaggaacg
agcggtcctaagggcgcgacgggtgatccgggcgtggcgggaccgatgggctccccggga
aagcaaggcgagcgcggcgaacagggcgaggcgggacccgtcggaccccggggaggaccg
ggcgagcgaggggaaagaggaccgggcggacccccgggagcatcgggaccacggggaggc
aaaggcgacgtgggccttcccggactgcctgggccggctggctatcggggtctcaagggc
caaaggggttccgtgggtccggatggtccgaaaggagagcagggacccccgggggccgag
ggcacgccgggataccgcggagacctgggcgatcagggcgagcccggcgaaaaaggggcg
acgggtccgccgggggagacgggaaacagaggaccggaaggcgggcgagggcagcaaggc
aaggagggcgagccgggccaggcgggaccgcgaggcatgcagggcgacatgggggtgccg
gggctgcccggcgcccagggacccgcgggcaaatcgccgacagacacgcacatcaaacag
gtctgcatgagagtcatgcaggagcagctggcccagctggcggccagcctcagcagaccc
gagtcgggcgtctcggggctccccgggccgccgggcccgccgggccccccgggccccagc
ggtgaaaacggcttcccgggtcacaccgggtccagagggcttcccggtctcaaggggccg
cccgggccgctgggccgcaaaggacccaaaggggaccaaggggagaggggggcccggggc
cccaccgcccatggacccaaaggcattgcgggcactcctggtttgccaggtaagccacag
ctgggagcacggcaaacgctgggaaatgaatccatatttcgatgttggcttctttag
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