Hippocampus comes (tiger tail seahorse): 109512718
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Entry
109512718 CDS
T04969
Symbol
slit1
Name
(RefSeq) slit homolog 1 protein isoform X1
KO
K06838
slit 1
Organism
hcq
Hippocampus comes (tiger tail seahorse)
Brite
KEGG Orthology (KO) [BR:
hcq00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
hcq00536
]
109512718 (slit1)
Glycosaminoglycan binding proteins [BR:
hcq00536
]
Heparan sulfate / Heparin
Axon guidance molecules
109512718 (slit1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
EGF
Laminin_G_2
LRRNT
Laminin_G_1
LRRCT
LRR_9
LRR_1
hEGF
DL-JAG_EGF-like
JAG1-like_EGF2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
109512718
NCBI-ProteinID:
XP_019720218
LinkDB
All DBs
Position
Unknown
AA seq
1562 aa
AA seq
DB search
MFFGTLEMCVWAGMLCALLTASAGACPALCTCSGTTVDCHGLGLRTMPRNIPRNTERLEL
NGNNLTRITKSDFAGLKYIRVLQLMENQITVIERGAFDDMKELERLRLNRNQLQHLPELL
FQKNPGLSRLDLSENLIQSIPRKAFRGATDIKNLQLDKNHIGCIEDGAFRALRGLEVLTL
NNNNISSIPVSSFNHMPKLRTFRLHSNNLNCDCHLAWLAQWLRQRPTIGLFTQCTAPPEL
KGLNVAEVQKHEFSCSGYQDSSSPQPCNTGGGSCPAMCTCSNNIVDCRGKGLTDIPANLP
DNMAEIRLEQNGIKAVPAGAFSPYKKLRRIDLSNNQISEIAPDAFQGLRSLNSLVLYGNK
ITDLPKGVFDGLYALQLLLLNANKIHCVRANTFQDLQNLSLLSLYDNKIQILAKGTFASL
RAIQTLHLAQNPFICDCNLKWLADYLRSNPIETSGARCASPRRLANKRIGQIKSKKFRCS
AKEQYVIPGAEDARLNNACNSDPVCPPKCRCESNVVDCSNLKLTKIPEHIPSSTTELRLN
NNDITTLEATGMFKSLTQLKKINLSNNKITEIEDGAFEGASSVNELHLTANQIDTVRSEM
FRGLEGLRMLMLRNNKISCIHNDSFTGLHNVRLLSLYDNQLTTITPGAFDTLQTLSTLNL
LANSFNCDCRLSWLGDWLRSRKIVTGNPRCQRPAFLKEIPLQDVALPDFRCEEGHEESSC
VPRPQCPSECTCLETVVRCSNKHLHALPKGIPRNVTELYLDGNQFSVLPKELSTFKFLQL
VDLSNNKINSLTNSSFANMSQLTTLILSYNSLRCIPKMAFSGLHSLRLLSLHGNEISELP
DGIFGDVASLSHLAIGANPLYCDCRLRWLSDWVKTGYKEPGIARCAGPRGLEGKLLLTTP
AKKFECTGEVDTAVLAKCNPCLSSPCQNQGVCHSDLVDIYRCNCAPGFKGKNCETALNAC
VSNPCANGGRCQVDKEDEGQYSCTCPLGFEGPACQINIDDCEDNDCENGATCVDGVNNYT
CFCPPYYTGDNATWTSTRQLLVAVCNITNDLRAGEMCEEMEDVCAPGRSPCKHQSTCLIT
SSGLKCMCAPGYVADDCSVDYDDCQEHRCQNGAQCVDELNGYTCQCEEGYSGQLCEVPPS
PLSLCELADCQNGAPCVERGGRALCQCPPEFGGPRCEKLVSVNFVDRDSYLLLSDLKNWP
QANITLQVSTAEDNGILLYNGDNDHIAVELYQGHVKVSYDPGSQPSHAIYSAETINDGQF
HTVELVTLDQMVNLSIDGGLPTTMDSFGAVRPLNGEAPLYVGGRGPLQNTPPSSSGMPVG
VHPGAFRLWHIQNSSSFHGCIQNLYINNELQDFTKTQMKPGVVPGCEPCRKIYCVHGICQ
PDGLQGPVCYCRPGWSGPHCDLPASNPCQGSKCVHGRCIPLDNESYRCDCTEGYRGALCN
QQGELFNPCRRLNCKHGRCQISDTGDAYCHCESGYTGELCDTESACRGEPMRDFYQVQRG
YAICQTTRTVSWVECNGVCEAGTCCASQRMKRRKYTFECSDGTTFSEEVEKSIKCGCVGC
SV
NT seq
4689 nt
NT seq
+upstream
nt +downstream
nt
atgttttttggcacgttggagatgtgcgtctgggccgggatgctctgcgccctgctgaca
gccagcgcgggtgcctgccctgccttgtgtacctgcagcggcaccacagtcgactgccac
ggactggggctcaggaccatgccgaggaatatcccacgcaacaccgagaggctggagctg
aatggtaacaatctcacacgcatcaccaagagtgactttgctggtctcaaatacatccga
gttctgcagctgatggagaatcagattaccgtgatcgagcgtggggcttttgatgacatg
aaagagctcgagagactgcgcctgaaccgtaatcaactgcagcaccttccagagttgctc
tttcagaagaaccctggcctgtctcgtctagatctgagcgaaaacctcatccagtccatc
ccaagaaaagctttcagaggagccacagacatcaaaaaccttcagctggataaaaaccac
atcggctgcatcgaagacggcgccttcagagctttgcgaggcttggaagtgctaaccctg
aacaacaacaacatcagcagcatccccgtttccagcttcaaccacatgcccaaactgcga
accttccgtctccactccaacaatctcaactgtgactgtcatctggcctggttggcccag
tggcttcgacagcggcctaccatcggactgttcactcagtgcacggcaccgccagagctc
aaaggtctcaatgtggctgaggttcagaaacacgaattcagctgctcgggttaccaagat
tcctccagtccacaaccttgcaacacaggtggaggttcctgtcccgccatgtgtacctgc
agcaacaacattgtggactgcagagggaaaggtttgactgacatcccagccaacctgccg
gacaacatggccgaaatacgtctggagcagaatgggattaaggcagttcctgcaggagcc
ttctccccctacaagaagctgcgcaggatagacctgagcaacaaccagatctcggagatc
gctccagacgccttccaaggcctgcgctccctcaactcgctcgtgttgtatggaaataag
atcaccgacctgcccaagggtgtctttgatggcctctacgctctgcaactgcttttgctg
aacgccaacaagattcactgcgtccgtgccaacaccttccaggacctgcagaacctctcg
ctgctttcgctctacgacaacaagatccaaattctggccaagggcaccttcgcttcgctg
cgagcgatacagacccttcacctggcccagaatccattcatctgcgactgtaacttgaag
tggcttgccgactacttgcgctccaaccccatcgagaccagcggcgcccgctgcgccagc
ccccgtcggctggccaacaaacgcatcgggcagatcaagagcaagaaattccgctgctcc
gccaaggagcagtacgtcatcccaggtgccgaggacgcccggctgaataacgcctgcaac
agcgatcccgtgtgtcctcccaagtgccgctgcgagtccaacgtggtggactgctccaac
ctgaagctcactaagatccccgagcacatcccgtcatccaccactgagctgcgcctcaac
aacaatgacatcaccactctggaggccaccggcatgttcaagagcctaacccagctcaag
aaaatcaacctcagcaataacaaaatcacggagattgaggatggcgcgttcgagggcgcc
tcgtccgtcaatgagcttcacctcacagccaatcagatcgacacggtccggagcgagatg
ttccgtggcctggagggactgcgcatgctgatgctgaggaacaacaagatcagctgcatc
cacaacgacagcttcaccggcctccacaacgtgcgtctgctgtctctctacgacaaccag
ttgaccaccatcacccccggagctttcgataccctgcagaccctctccaccctaaacctt
cttgccaattccttcaactgcgactgtcgcctgtcctggctgggagactggctgaggagc
aggaagatcgttacggggaaccctcgctgccagcgtccggccttcctcaaggagatcccc
ctgcaggatgtagcactgcctgatttccgctgcgaggaaggccacgaggagtcaagttgt
gtgcccagacctcagtgccccagcgagtgcacttgcctggagacggtggttcgctgcagt
aacaagcacctccacgcgctgcccaaaggaatccccagaaatgtgaccgaactgtatctg
gatggaaaccagttcagcgtgctaccaaaggagctgtccacctttaagttcctccagcta
gtggatctgagcaacaacaagatcaactctctgaccaactcatctttcgccaacatgagc
cagctcaccaccttaatcttgagctacaactccttgcgctgcattcccaaaatggccttc
agtggactgcactctctccggctactgtctctccatggcaacgaaatctccgagcttccc
gatggcatcttcggtgacgtggcctctctctcccacttagcaatcggcgccaacccgctg
tactgcgactgccgcctgcgttggttgtccgactgggtcaagactggatacaaagagcct
ggtatcgcccgctgtgctggtccacgcggtctggagggcaaactcctgctcaccacacca
gcaaagaagtttgaatgcacgggtgaggtggacacagcggtgctggccaagtgtaacccg
tgtctgtccagcccgtgtcagaaccagggtgtgtgtcatagcgacttggtggacatctac
aggtgcaactgtgctccgggattcaagggcaagaactgcgagacggctctcaacgcttgt
gtgagcaacccttgcgccaacggaggtcgatgccaagtggataaggaggatgagggtcag
tacagctgcacatgtccgctgggtttcgagggtcccgcctgccagatcaacattgacgac
tgcgaggacaacgactgcgagaacggcgccacctgcgtggacggagtcaacaactacact
tgtttttgtcccccctactacacaggtgacaatgcgacatggaccagcactcgacagctc
cttgttgctgtttgtaatattacaaatgatctgcgtgcaggggagatgtgtgaggaaatg
gaggacgtgtgcgccccaggacgaagtccctgcaaacatcagtctacctgcctcatcacc
tcctctgggctcaagtgcatgtgcgctcctggttacgtggctgacgactgcagtgtggac
tacgacgactgccaggagcatcgctgtcaaaacggagcccagtgtgtagatgagctgaac
gggtacacctgtcaatgtgaggaaggttacagtggtcagctgtgtgaagttcccccctcg
ccgttgtccctgtgcgagcttgctgactgtcagaacggcgccccctgtgtggagcggggt
ggccgcgccctctgccagtgccccccagagtttggcgggccacgctgcgagaagctggtc
agcgtcaactttgtggacagagactcgtacctgctgctctctgacctcaagaactggccg
caagccaacatcaccctgcaggtttccacagcggaggataacggtatcctcttatacaac
ggagacaacgatcacattgcagtggagctgtaccaaggtcatgtaaaggtcagctacgac
ccaggcagccagcccagccacgccatctacagtgctgagaccatcaatgacggtcagttc
cacacggtggagttggtcacgttggaccagatggtgaacctgtccatcgacgggggtctc
cccaccaccatggacagcttcggggcagtgaggcccctcaacggagaggctccactatac
gtggggggtaggggccctctccagaacacacctccctcctcttcagggatgcccgtgggc
gtacacccgggtgccttccgcctgtggcatatccagaacagctccagttttcacggctgc
atccagaacctgtacatcaacaacgagctgcaggacttcaccaagacccagatgaaaccc
ggcgtggtgccgggctgtgagccttgcaggaagatctactgcgtgcacggcatctgccag
cccgacggcctccaggggcccgtgtgctactgccggccaggctggagcggacctcactgc
gatctgccggcctccaacccctgtcaaggcagcaaatgtgtccatggcagatgcatcccg
ctggacaacgaatcttaccgctgcgattgtaccgagggctaccgcggtgcgctgtgcaac
caacagggggagctgttcaacccctgccgccggctgaactgcaaacatggccgctgccaa
atctccgacacgggagacgcctactgtcactgcgaaagtggctacacaggggaactctgt
gatacagagtcggcgtgtcggggcgagcccatgcgggacttctaccaggtgcagcgaggc
tacgctatctgccagacaacgcgcaccgtgtcctgggtggaatgcaacggcgtgtgcgag
gcaggcacctgctgcgccagccagcggatgaagcgccggaaatacacgtttgagtgcagc
gacgggaccactttcagcgaggaggtggagaagagcatcaagtgcggatgtgtgggctgc
agcgtctag
DBGET
integrated database retrieval system
