Hippocampus comes (tiger tail seahorse): 109519630
Help
Entry
109519630 CDS
T04969
Name
(RefSeq) collagen alpha-1(IX) chain-like isoform X1
KO
K08131
collagen type IX alpha
Organism
hcq
Hippocampus comes (tiger tail seahorse)
Pathway
hcq04510
Focal adhesion
hcq04512
ECM-receptor interaction
hcq04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hcq00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109519630
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109519630
09142 Cell motility
04820 Cytoskeleton in muscle cells
109519630
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
hcq00535
]
109519630
Proteoglycans [BR:
hcq00535
]
Extracellular matrix (ECM) proteoglycans
Others
109519630
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
109519630
NCBI-ProteinID:
XP_019731852
LinkDB
All DBs
Position
Unknown
AA seq
947 aa
AA seq
DB search
MVFCSSALTRRQPCAVTAWTYLPVCVALLLAPALGQLDFNRLDGDTVCPPMRSGQDDLPG
FDLITQFQLDVIPLKGVRKVDGSTPLQVAYRLDREANFQIPTMLNFPRGFPDEYSFMVTF
RMIKNTVSKVWNVWQIVDEDGRKQAGMRLNGDQQSLEYFLTSPDGNLQTVTFSGLSVLFN
TKWHKVMIGVERDRVTLYVDCQPVDQKPIKGKGPINTEGDTLIGRLDADPEASVVFELQW
MLIHCDPKRARRESCNELPATEMFANAEPDRSVPGPPGATGPEGPRGPAGEDGRDGRDGV
PGSPGMPGAAGSKGEQGEIGLPGQRGLPGLPGPAGSPGPMGPRGLVGERGLPGFPGPAGP
AGPAIEGPAGPPGKPGIPGDEGNIGPEGPPGPKGANGNPGPPGIPGPPGPVGPPGASGEG
SGESCPAACPAGPQGLAGLPGMKGHKGMPGENGKDGLPGEKGDTGPEGPRGTPGRMGDDG
QRGAIGLPGTTGEKGDRGPPGFNGMPGPTGPPGAPGVEGLRGRQGLEGPKGDEGAIGPQG
EQGIQGEKGDVGAPGKDGLDGISGVDGAKGEPGPAGIVGVRGVVGIPGLPGKQGVVGPSG
EKGDTGADGATGPIGLPGKTGEAGTPGEDGKPGDKGSTGEPGKQGPVGPAGPPGIEGEKG
QKGDSGEKGIKGHTGHKGDQGPMGPEGPKGSLGDTGLAGDPGVKGDQGPPGIPGIKGEHG
SKGVRGATGAEGRPGQPGHEGLAGPMGARGLEGEPGIPGAPGPRGLPGPRVSDDRLRDMC
SAVVEEQLAEFMKDFLKRPAALGAPGVPGIAGPPGPAGADGAPGSPGAQGPMGAKGHPGF
FGIPGAPGKKGDPGAKGDKGDKGEAGVGIKGSAGLPGAPGVAGAPGIGKDGKDGERGEQG
SPGVPGAAGPKGPPGPPGLCDPSTCINRNPAPLFMYSGKKSGAYKKK
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atggtcttctgctcctctgctttgacgagaaggcagccatgtgccgtgacggcatggaca
tacttgcctgtttgcgtggccctcctgcttgctcctgcacttggacaactggactttaac
cgactggatggcgatactgtctgcccacctatgagaagcggacaggatgatcttccaggt
tttgatttgatcacccagttccagctggatgtcatccccctgaaaggcgtgaggaaggtc
gacggctccactcctctccaggtggcctaccgcctggaccgggaggccaactttcaaatt
ccaaccatgctgaactttccccgtggattcccggatgagtattccttcatggtgacattc
cgcatgatcaagaacacagtgagcaaggtgtggaacgtctggcaaatagtcgacgaggac
ggccgcaagcaggccgggatgaggctcaacggagaccagcagtccctggagtacttcctg
acgagccctgacggcaacctgcagaccgtcaccttctctggcctgtctgtgctctttaac
accaagtggcacaaggtgatgatcggcgtcgagcgcgaccgggtcacgctctacgtggac
tgccagcccgtggaccagaagcccatcaagggcaaagggcccattaacacggagggagac
actcttataggcaggcttgacgctgatcccgaggcctccgtggtgtttgagctccagtgg
atgctgattcactgcgacccaaagagagcccggcgagagagctgcaatgagctgcctgcc
accgagatgtttgccaatgcggagcctgacagatcagtcccaggtccccctggtgccacc
ggccctgaaggtcctcggggtcctgcaggagaagacggcagagatggacgagatggtgtt
ccggggtctcctggcatgccaggtgcagctggcagcaaaggtgagcagggggaaattgga
cttccagggcagcgaggcctacctggtcttccaggacctgctggttctcctggcccaatg
ggtcctcgagggctagtgggcgagagaggtcttcctggttttcccgggcctgcaggtcct
gctggcccagcaattgaaggacctgctggaccaccaggaaaaccgggaatcccgggagat
gaagggaatatcggacctgagggtccaccaggacccaaaggggctaatggaaacccggga
cctccagggattccaggacctcctggtccagtggggccgcctggtgccagtggtgaggga
agtggggaatcttgccccgcagcctgccctgctggaccccagggactggctgggctacca
ggcatgaagggacataaaggtatgccaggtgaaaatggcaaagatggtctacctggagaa
aagggagacactggacccgaaggtcctcgaggtacgccaggtcgcatgggagatgacggc
caaagaggagccattggattacctggtacaactggagaaaaaggagatagaggtcctcca
ggtttcaatggaatgcctggacccaccggcccacctggggctcccggtgtggagggattg
cgtggacgtcaaggtttggagggacccaagggtgatgaaggagcaataggccctcaagga
gagcagggtattcaaggagaaaagggagatgttggagcgccaggcaaagatggccttgat
ggaatttctggagttgatggtgccaagggagagcctggtccagccggaatagttggtgtg
aggggcgttgtgggtattccggggcttcctggtaaacagggagtagttggaccttctggt
gaaaagggtgacaccggtgctgatggagccactgggccaattgggcttccaggcaaaact
ggcgaggccggaacacctggagaagatggaaaaccaggagataaagggtcaactggtgaa
ccagggaaacaagggccagtggggcctgcgggtcctccaggcatcgagggtgaaaaggga
caaaaaggcgacagtggggaaaaaggaatcaaaggtcacactggacacaagggggatcag
gggccaatgggaccagagggaccaaaaggaagtttgggtgatacaggtcttgctggagat
cctggagtcaagggggaccagggcccacctggtattcctggaattaaaggagagcatggc
tcaaagggcgtcagaggagcaaccggcgcagaaggcagaccaggtcagccaggccacgag
ggtttggctggtccaatgggagcccgaggactcgagggagagccgggaatacctggagcg
ccgggtcccagaggtctgcctggccctagagtgagtgatgacaggcttcgggatatgtgt
tcggctgttgttgaagaacaattagcagaattcatgaaagattttctaaagaggcctgct
gccctgggagcccctggcgtcccaggaatagcgggaccaccgggccctgccggagctgac
ggagcgccgggatcaccgggagctcaagggccgatgggtgccaaaggccacccgggattc
tttgggatcccgggtgcaccaggcaagaaaggtgatcctggagctaagggagataaagga
gataagggcgaagccggtgtgggaatcaaaggaagcgcaggactcccaggtgcaccaggt
gttgcaggtgctcctggcatcggcaaagatggcaaagacggagaacgtggagaacaagga
agccccggtgtcccaggagctgccggtccaaagggtcctcctggtccaccgggtctttgt
gacccatcaacctgcataaaccgaaacccagcacctctcttcatgtacagcgggaagaag
tcgggcgcttacaaaaaaaagtga
DBGET
integrated database retrieval system
