KEGG   Haloferax gibbonsii: ABY42_07615
Entry
ABY42_07615       CDS       T04025                                 
Name
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
hgi  Haloferax gibbonsii
Pathway
hgi03030  DNA replication
hgi03410  Base excision repair
hgi03420  Nucleotide excision repair
hgi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hgi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    ABY42_07615
   03410 Base excision repair
    ABY42_07615
   03420 Nucleotide excision repair
    ABY42_07615
   03430 Mismatch repair
    ABY42_07615
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hgi03032]
    ABY42_07615
   03400 DNA repair and recombination proteins [BR:hgi03400]
    ABY42_07615
Enzymes [BR:hgi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     ABY42_07615
    6.5.1.6  DNA ligase (ATP or NAD+)
     ABY42_07615
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     ABY42_07615
DNA replication proteins [BR:hgi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    ABY42_07615
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     ABY42_07615
DNA repair and recombination proteins [BR:hgi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     ABY42_07615
   NER (nucleotide excision repair)
    Other NER factors
     ABY42_07615
   MMR (mismatch excision repair)
    Other MMR factors
     ABY42_07615
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: AKU07616
UniProt: A0A0K1IT26
LinkDB
Position
1446935..1448692
AA seq 585 aa
MQFAEFAARAAEIEAEPADLAVVSLLSDLFSDAGDDLPTVARFVQGRVFPAWDSTTLDIG
PRLCHEAIARAAGPNVSADDVEDRLADRGEIGAVAASYDFGGQRGLAAFGSGGQDGLTVA
EVDSELQALAAASGSGSEETKLKTLYGLFNRTDPDEARILARLVLSEMRIGVGEGAVRDA
VAEAFLVDPADAAAIRDDDADAETEAAARDRRNEAVAAVARALQVSNDYGMVAELARDEG
EAGLDGVRLEVGRPVQAMLAQAGTAADALDEWDAAAVETKFDGARVQVHRDADGEVSLFS
RNMEDVTGALPEVVEFVADAVDEPVILDGEVVAMDDDGEPLPFQEILRRFRRKHDVGRMR
EEVRVELRAFDCLHAGGDDLLTDPLSDRHDRLAAVLGDDSAAVSDLLLTDDADEIAAYEA
DALDAGHEGIMLKNPDATYSPGDRGKNWLKRKPDVETLDLVVTGAEWGEGRRAEFLGTFL
LSARVEAESGDDAFETIGKVATGITDEELVELTDLLEPEIERESGKEVDIRPSVVFEVGY
EEIQASPTYSSGYALRFPRFVTVREDKTAETADSLERVERLADSQ
NT seq 1758 nt   +upstreamnt  +downstreamnt
atgcagttcgccgagttcgccgcccgcgccgccgagatagaagccgagccagcggacctc
gcggtcgtctcgctcctctcagacctcttttcggacgccggcgacgacctcccgacggtc
gcccggttcgtccaaggccgcgtcttcccggcgtgggactcaaccacgctcgacatcggc
ccgcggctctgccacgaggccatcgcccgcgcggccggtccgaacgtctccgccgacgac
gtggaagaccgcctcgccgaccgcggcgaaatcggcgcggtcgccgcgagctacgacttc
ggcggccagcgcggcctcgccgccttcggctcgggcggtcaagacggcctaaccgtcgcc
gaagtcgattcggaactccaggcgctcgcggccgcctccggctcggggagcgaagaaacg
aagctcaagacgctctacggcctgttcaaccggaccgaccccgacgaggcgcgcatcctc
gcacggctcgtcctctccgagatgcgcatcggcgtcggcgagggggccgtccgcgacgcc
gtcgcggaggcgttcttggtcgaccccgcggacgccgccgccatccgcgacgacgacgcc
gacgcggagaccgaagccgccgcccgcgaccgccggaacgaggccgtcgccgccgtcgcc
cgcgccctacaggtgtcgaacgactacggcatggtcgccgaactcgcccgcgacgagggc
gaagccggcctcgacggggtccgactcgaagtcggccgccccgtacaggcgatgctggcg
caggccggcaccgccgccgacgcgctcgacgagtgggacgccgccgcggtcgagaccaag
ttcgacggcgcgcgcgtgcaggtccaccgcgacgccgacggcgaggtctcgctgttctcg
cgcaacatggaggacgtgaccggcgcgctccccgaggtggtcgagttcgtcgcggacgcg
gtcgacgagccggtcatcctcgacggcgaggtcgtggcgatggacgacgacggcgagccc
ctcccgtttcaggagattctccggcgcttccgccgcaagcacgacgtgggccggatgcgc
gaggaggtccgggtcgaactccgggcgttcgactgcctgcacgccggcggcgacgacctc
ctgaccgacccgctgtccgaccggcacgaccgactggccgcggtcctcggcgacgactcg
gcggccgtctccgacctcctcctgaccgacgacgccgacgaaatcgccgcctacgaggcc
gacgccctcgacgccggccacgagggaatcatgctgaagaaccccgacgcgacgtactcg
ccgggcgaccgcgggaagaactggctgaaacgcaagcccgacgtggagacgctggacctc
gtcgtcaccggcgcggagtggggcgagggccgccgcgcggagttcctcgggacgttcctg
ctttcggcccgcgtcgaagccgagtccggcgacgacgccttcgagaccatcggcaaggtc
gccacgggcatcacggacgaggagttagtcgagttgaccgacctcctcgaacccgaaatc
gaacgggagtccggcaaggaagtcgacatccgcccctcggtcgtcttcgaggtcggctac
gaggagattcaggcgtcgccgacgtactcctcgggctacgcgctccggttcccgcggttc
gtcaccgtccgcgaggacaagaccgccgagacggccgactcgctggagcgcgtcgagcga
ctggccgactcgcagtga

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