Heterocephalus glaber (naked mole-rat): 101709860
Help
Entry
101709860 CDS
T02812
Symbol
Smg5
Name
(RefSeq) SMG5, nonsense mediated mRNA decay factor
KO
K11125
protein SMG5
Organism
hgl
Heterocephalus glaber (naked mole-rat)
Pathway
hgl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hgl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101709860 (Smg5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hgl03019
]
101709860 (Smg5)
03032 DNA replication proteins [BR:
hgl03032
]
101709860 (Smg5)
Messenger RNA biogenesis [BR:
hgl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
101709860 (Smg5)
mRNA cycle factors
Common to processing body (P body) and stress granule
101709860 (Smg5)
DNA replication proteins [BR:
hgl03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
101709860 (Smg5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
101709860
NCBI-ProteinID:
XP_004871255
UniProt:
A0A0P6JD71
LinkDB
All DBs
Position
Un
AA seq
1018 aa
AA seq
DB search
MSQGPPAGESSEPEAKVLHTKRLYRAVVEAVHRLDLILCNKTAYQEVFKPENISLRNKLR
ELCVKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKKHIHSRSTLECAYRTHLVAGIG
FYQHLLLYIQSHYQLELQCCIDWTHVTDPLIGCKKPVLASGKEMDWAQMACHRCLVYLGD
LSRYQNELAGVDTELLAERFYYQALSVAPQIGMPFNQLGTLAGSKYYNVEAMYCYLRCIQ
SEVSFEGAYGNLKRLYDKAAKMYHQLKKGETRKLSPGRKRCKDIKRLLVNFMYLQSLLQP
KSSSVDSELTSLCQSVLEDFNLCLFYLPSSPSLSLASEVEEEYEGGCAFLPDLLLFQMLI
ICLMGVHSLKRAGSKQYSAAIAFTLALFSHLVNHVNIRLQAELEEGENPVPAFQNDGADE
AESREALEKEEETDPEPPPMAPHIAGGRKNRKFSRLSCLRRRHHRRPPNAGDDSDLSEGF
ESDSSCDSARASEGSDSGSDKSLEGGGTAFDAETDSEMNSQESRSDLEDMEDEDGTRSLA
LEPPRARSEAPEALNGSLGPSEASIASNLQAMSTQMFQTKRCFRLAPTFSNLLLQPPAAP
QGLAGCRPCVNGDVDKPSEPASEEGSESEGSESSGRSCQNERSLQEKLQVLTAEGLLPAV
KVFLDWLRTNPDLIVVCAQSSQSLWNRLSVLLNLLPAAGELQESGLALCPEVQDLLGGCE
LPDLPSSLLLPEDMALRNLPPLRAAHRCFNLDADRPLLSTLEESVVRICCIRSFGHFVSR
LQGSILQFNPEVGIFVSTAQAEQESLLQQAQAQFRMAQEEARRNRLMRDMAQLRLQLEVS
QLEGSLQQPKAQSAMSPYLVPDTQALCHHLPVIRQLATSGRFIVIIPRTVIDGLDLLKKE
HPGARDGIRYLEAEFKKGNRYIRCQKEVGRSLERHKLKRQDADAWTLYKILDSCKQLTLA
QGAAEEDPSGMVTIVTGLPLDSPGALSGPMQAALQAAAHASVDIKNVLDFYRQWKEMG
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgagccagggcccccccgccggggagagcagcgagcccgaagctaaggttctgcacacc
aagcggctttaccgggctgtggtggaggctgtgcatcgacttgacctcattctttgcaac
aaaactgcttatcaagaagtgttcaaacctgagaacattagcctgaggaacaagctgcgt
gaactctgtgtcaagcttatgttcctccatcccgtggactatgggaggaaggctgaggag
ctgctgtggagaaaggtgtactatgaagttatccagcttatcaagacaaacaagaagcac
atccatagccggagcaccttggaatgtgcctaccggacgcatctggttgctggcattggc
ttctaccagcatctcctcctctatatccagtcccactaccagctggagctgcagtgctgc
attgactggacccatgtcaccgaccccctcatcggatgcaagaagccagtgttggcctcg
gggaaggagatggactgggcacagatggcctgccaccgatgtctcgtgtacctgggggac
ctgtcacgctatcagaatgaactagccggtgtagacactgaactgctcgctgagagattc
tactaccaggccctgtcagtagctccccagattggaatgcccttcaaccagcttggcacg
ctcgcgggcagcaagtactacaacgtggaggccatgtactgctacctgcgctgcatccag
tcagaagtgtccttcgagggggcctatgggaacctgaagcggctgtacgataaggcagcc
aaaatgtaccaccagctgaagaagggtgagactcggaaactctctcctggcagaaagcga
tgcaaagacattaagaggttgctggtgaacttcatgtatctacagagcctcctgcagccc
aaaagcagctctgtggactccgagctcacttcgctttgccagtcagtcctggaggacttc
aacctgtgtctcttctacctgccctcctcacccagcctcagcctggccagtgaggtggag
gaggagtatgagggcgggtgtgctttcctcccagacctgctcctctttcagatgctcatc
atctgcctcatgggtgtgcacagcctgaagagagcaggatccaagcagtacagtgcagcc
attgctttcaccctggccctcttctcccacctcgtcaaccatgtcaacattcggctgcag
gctgagctggaggagggcgagaaccccgtcccagcgttccagaatgatggcgcagatgag
gcagagtccagggaagcactggagaaagaggaggaaacggaccccgagccgcctcccatg
gcaccccacattgctggaggcagaaagaaccggaagttctcgcgcctctcctgcctccgc
cgccgccaccaccgccgcccacccaacgctggtgatgacagtgacttgagtgaaggcttt
gaatcagactcaagctgtgactcagcccgggccagtgaaggctcggacagcggctctgac
aagagtctagaaggtgggggcacagcctttgatgctgagacagactcagaaatgaacagc
caggagtcccggtcagacctggaagacatggaggacgaggacgggacccggtccctagcc
ctggagccgcctcgggccagatcagaggctcccgaggccctcaacggctctctgggcccc
agtgaggctagcattgccagcaatctgcaagccatgtccacccagatgttccagaccaag
cgctgcttccgactggcccctaccttcagcaacctgctcctgcagccccccgctgcccct
cagggcttggctggctgcaggccctgtgtcaatggggatgtggataagccctcagagcca
gcctctgaggagggctcggagtcggagggcagcgagtccagcgggcgctcgtgccagaat
gagcgcagcctgcaggagaagctgcaggtcctgaccgccgagggcctgctccctgctgtg
aaggttttcctggactggctgcggaccaaccccgacctcatcgtcgtgtgcgcacagagc
tctcagagtctgtggaatcgcctgtctgtgttgctgaatctgttgcctgctgctggtgag
ctccaggagtctggcctggccctgtgtcctgaggtccaggatctcctgggaggctgtgaa
ctgccggacctcccctccagcctgctgctcccagaggacatggcgctgcgcaacctgcct
cccctccgggctgctcacaggtgctttaacctggatgcggaccggcccctgctcagcacc
ttggaggagtcggtggttcgcatctgctgcatccggagcttcgggcactttgtgtcccgc
ctgcaaggcagcatcctgcaattcaacccagaagtcggcatctttgtcagcacggcccag
gcggagcaggagagcctgctgcagcaggcccaggcgcagttccgcatggcgcaggaggag
gcccggcgcaaccggctgatgcgggacatggcccagctgcggcttcagctcgaagtctct
cagctggaaggcagcctgcagcaacccaaggctcagtcggccatgtctccctacctcgtc
cctgacacccaggccctctgccaccacctccctgtcatccgccagctggccaccagtggc
cgcttcattgtcatcatcccaaggacagtgattgatggcctggatttgctgaagaaggag
cacccgggggcccgggacggcatccgttacctggaggcggagtttaagaaaggaaacagg
tacattcgctgccagaaggaggtggggaggagcttggagcggcacaagctgaagcggcag
gacgcggacgcctggaccctctataagatcctggacagttgcaagcagctgactctggcc
cagggggcagcagaggaggacccgagcggcatggtgaccatcgtcacaggccttccgctg
gacagccccggggcgctctcgggccccatgcaggccgccctgcaggccgctgcccatgcc
agcgtggacatcaagaacgttctggacttctacaggcagtggaaggagatgggctga
DBGET
integrated database retrieval system
