KEGG   Halobacterium hubeiense: Hhub_2028Help
Entry
Hhub_2028         CDS       T04202                                 

Gene name
ligB
Definition
(GenBank) DNA ligase (ATP)
  KO
K10747  
DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
hhb  Halobacterium hubeiense
Pathway
DNA replication
Base excision repair
Nucleotide excision repair
Mismatch repair
Brite
KEGG Orthology (KO) [BR:hhb00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    Hhub_2028 (ligB)
   03410 Base excision repair
    Hhub_2028 (ligB)
   03420 Nucleotide excision repair
    Hhub_2028 (ligB)
   03430 Mismatch repair
    Hhub_2028 (ligB)
Enzymes [BR:hhb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Hhub_2028 (ligB)
    6.5.1.6  DNA ligase (ATP or NAD+)
     Hhub_2028 (ligB)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Hhub_2028 (ligB)
DNA replication proteins [BR:hhb03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Hhub_2028 (ligB)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Hhub_2028 (ligB)
DNA repair and recombination proteins [BR:hhb03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Hhub_2028 (ligB)
   NER (nucleotide excision repair)
    Other NER factors
     Hhub_2028 (ligB)
   MMR (mismatch exicision repair)
    Other MMR factors
     Hhub_2028 (ligB)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
I:complement(953106..954773)
Genome map
AA seq 555 aa AA seqDB search
MEFGSFAAHAADVEATDADLDVVAKVAALFGEAGDDLAVVARFVQGRVFPAHSETKLDIG
PRLCYEALARAASTNVTVEDVEDRLAETGDIGEVAANLDLGGQAGLGAFAADSGDDDLTV
AEVYEDLTALAAAEGDGSQDEKVTLLFGLFNDCSGEEARYLARLVLGEMRIGVGEGAVRD
AIAEAFDVPVEAAERALQVSNDYGLVAVTARDEGEDGLDELHLEVGRPVQAMLAQAGTVT
DALDEWEEAAVETKFDGARVQVHWDGDEVSLYSRNMEDVTDALPELVEFVEEHVDAPVIL
DGEVVAVDDDGSPLPFQEILKRFRRKHDVAEMRDEIRVELNAFDCLHAHGEDLLDEPFRK
RHERLRDVVDDDSAVSEILVTDDADEIAAFEERALEAGHEGIMLKDPDAAYTPGDRGKHW
LKRKPDVETLDLVVTGAEWGEGRRASFLGTFVLSARDEETGEYATIGKVATGITDEELAD
LTDLLEPHIRSEDGQEVDLEPAVVFEVGYEEIQTSPTYESGYALRFPRFVTVREDKPPED
ADTIERVERLAEQQG
NT seq 1668 nt NT seq  +upstreamnt  +downstreamnt
atggaattcggttcgttcgccgcgcacgccgccgacgtggaggcgacggacgcggacctc
gacgtcgtcgcgaaggtcgcggccctgttcggcgaggccggcgacgacctcgcggtggtc
gcgcggttcgtccaggggcgggtgttcccggcgcactcggagacgaaactcgacatcggg
ccgcggctctgctacgaggcgctggcgcgcgcggcgtccacgaacgtcaccgtcgaggac
gtcgaggaccggctcgccgagacgggtgacatcggcgaggtcgctgcgaacctcgacctc
ggcggacaggcgggactgggcgcgttcgcggcggacagcggcgacgacgacctgaccgtc
gccgaggtgtacgaggacttgactgcgctggcggccgcggagggcgacggcagccaggac
gagaaagtcaccctcctcttcgggctgttcaacgactgctcgggcgaggaagcacgatac
ctcgcgcggctcgtgctcggggagatgcgcatcggcgtcggcgagggcgcggtccgggac
gccatcgcggaagcgttcgacgtgcccgtcgaggctgccgagcgcgcgctccaagtctcg
aacgactacgggctcgtggccgtgaccgcccgcgacgagggcgaggacggcctcgacgag
ctacacctggaagtcgggcggcccgtgcaggcgatgctcgcgcaggccggcacggtcacc
gacgccctcgacgagtgggaggaggccgccgtggagacgaagttcgacggcgcgcgcgtc
caggtccactgggacggcgacgaggtgtcgctgtactcgcggaacatggaggacgtcacg
gacgcgctccccgaactcgtggagttcgtcgaggagcacgtcgacgcgcccgtaattttg
gacggcgaggtggtcgcggtcgacgacgacgggagcccgctgccgttccaagagattctc
aagcgcttccggcgcaagcacgacgtcgccgagatgcgcgacgagattcgcgtcgaactg
aacgccttcgactgtctgcacgcccacggtgaggacttgctggacgaaccgttccggaag
cgtcacgagcgcctccgcgacgtcgtcgacgacgactccgcagtctcggagattctggtc
acggacgacgccgacgagattgcggccttcgaggagcgcgccctcgaagccggccacgag
ggcatcatgctgaaagaccccgacgcggcgtacacgcccggtgaccgcgggaagcactgg
ctgaagcgcaagcccgacgtggagacgctcgatttggtcgtgacgggcgcggagtggggc
gagggccggcgcgcgtcgttcctcgggacgttcgtgctctccgcgcgcgacgaggaaacc
ggcgagtacgcgaccatcgggaaggtcgccaccggcatcaccgacgaggaactcgcggac
ctcacggacctcctggagccacacatccgctcggaggacggacaggaagtggacctcgaa
cccgccgtcgtcttcgaggtcggctacgaggagattcagacgtcgccgacctacgagtcg
gggtacgcgctccggttcccgcgattcgtcaccgtccgtgaggacaaacccccggaggac
gccgacaccatcgagcgcgtcgaacgcctcgccgagcagcagggctga

DBGET integrated database retrieval system