KEGG   Haloarcula hispanica ATCC 33960: HAH_1173
Entry
HAH_1173          CDS       T01597                                 
Symbol
lig2
Name
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
hhi  Haloarcula hispanica ATCC 33960
Pathway
hhi03030  DNA replication
hhi03410  Base excision repair
hhi03420  Nucleotide excision repair
hhi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hhi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HAH_1173 (lig2)
   03410 Base excision repair
    HAH_1173 (lig2)
   03420 Nucleotide excision repair
    HAH_1173 (lig2)
   03430 Mismatch repair
    HAH_1173 (lig2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hhi03032]
    HAH_1173 (lig2)
   03400 DNA repair and recombination proteins [BR:hhi03400]
    HAH_1173 (lig2)
Enzymes [BR:hhi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     HAH_1173 (lig2)
    6.5.1.6  DNA ligase (ATP or NAD+)
     HAH_1173 (lig2)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     HAH_1173 (lig2)
DNA replication proteins [BR:hhi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    HAH_1173 (lig2)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     HAH_1173 (lig2)
DNA repair and recombination proteins [BR:hhi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     HAH_1173 (lig2)
   NER (nucleotide excision repair)
    Other NER factors
     HAH_1173 (lig2)
   MMR (mismatch excision repair)
    Other MMR factors
     HAH_1173 (lig2)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: AEM56788
UniProt: G0HXQ6
LinkDB
Position
I:1105828..1107492
AA seq 554 aa
MEFAAFADRAEKIEAESADTAITEAVTALLTDAGPDLSTLARFVQGRVFPSYESRTLDIG
PRLCYEAIARAAGQNVSTDDVEQRLADLGEIGAVAASYDLGGQQGLAAFGAGGGGDDALT
VAELDDELRNLAAVDGSGSQGTKVDILFGLFSRCSSTEAGYLARLVLSEMRIGVGEGTVR
DAVAAAFDVPVEAVERAVQVSNDYGMVAEVARDEGESGLATVTLEIGRPVQAMLAQAGTV
AGALEDWDRAAVEWKYDGARVQVHFDGEDARLFSRNMEEVTDPLPEVVDTVESTLDAPAI
LDGEVVAVDADGDPLPFQEVLRRFRRKHDVAAAREDVAVRLHAFDCLHADGEDLLDASLK
TRHDRLESLLPAGSDVVSRMWLSDDAEEIENLEAEALAAGQEGIMLKDPTAAYSPGKRGK
HWRKRKPDVETLDCVVTGAEWGEGRRANVLGSFELSVRTDDGYATVGNVATGITDEELDD
LTERFEPHIRREDGRDVALDPAIVFEVGYEEIQASQSYASGYALRFPRFLSVREDKTPAG
ADSLERVERLAASQ
NT seq 1665 nt   +upstreamnt  +downstreamnt
atggagtttgccgccttcgccgaccgggccgagaaaatcgaagctgagagtgccgatacc
gcgattacggaggcggttactgccctacttaccgacgctgggccggacctctcgacgctc
gctcgcttcgtccagggccgtgtgtttccgtcctacgagtcccgcacgctcgacatcggg
ccgcggctctgctacgaggcgattgcccgggcggcgggccagaacgtcagtactgacgac
gtggagcagcgcctcgcggacctgggcgaaatcggggccgtcgcggccagctacgacctc
ggtggtcagcagggcctcgccgcgttcggtgctggtggtggaggggacgacgcgctgacc
gtcgcggaactcgacgacgagctacggaacctggcggctgtcgacggcagtgggagccaa
gggacgaaagtcgatatcctctttggcctgttctcgcggtgttcgtcgacggaagccggc
tacctcgcccgcctcgtcctctcagagatgcgtatcggcgtcggcgaggggacggtccgg
gacgctgtggcggccgctttcgacgtgccagtcgaggccgtcgaacgggccgtgcaggtg
tcgaacgactacggtatggttgccgaagtggcccgcgacgagggggagtccggactggcg
accgtcaccctcgaaatcggccgccccgttcaggcgatgctggcacaggcgggcacggtc
gctggcgcgctcgaagactgggaccgcgccgcggtcgagtggaagtacgatggggctcgc
gtgcaggtccacttcgacggcgaggacgcgcggctgttctcccggaacatggaggaagtc
acggacccgcttcccgaggtcgtcgacactgtcgagtcgacactcgacgcaccggcaatt
ctcgacggcgaggtggtcgcagtcgacgccgacggcgacccgctcccgtttcaggaggtg
ctgcggcgcttccgccggaaacacgacgttgccgcggcccgcgaggacgtggccgtccgc
ctgcacgccttcgactgcctgcacgccgacggcgaggacctgctcgatgcctcgctgaag
acgcgccatgaccgcctcgaatcactcttgcctgccgggagtgacgttgtctcgcggatg
tggctgtccgacgacgccgaggaaattgaaaatctggaggctgaggccctcgccgctggg
caggagggaatcatgctgaaagacccgactgcagcctactcgcccggaaagcggggcaag
cactggcgcaagcgcaagcccgacgtggagacgctggactgcgtcgtcaccggcgcggag
tggggcgagggccgccgggcgaacgtcctgggctcgttcgaactgtctgttcggaccgac
gacggttacgccaccgtcggcaacgtcgcgacgggcattaccgacgaggaactggacgac
ctgacggagcgcttcgaaccgcacatccggcgagaggacggccgcgacgtggcgctcgac
ccagctatcgtcttcgaggtcggctacgaggagatccaggcctcacagtcctacgcctcg
ggctacgcgcttcggttcccccggttcctctcggtccgcgaggacaagacgcccgccggc
gctgactcgctggagcgcgtcgagcggctggcggcgtcacagtaa

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