Hippoglossus hippoglossus (Atlantic halibut): 117755346
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Entry
117755346 CDS
T07778
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04510
Focal adhesion
hhip04512
ECM-receptor interaction
hhip04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117755346 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117755346 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117755346 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hhip04147
]
117755346 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
hhip00536
]
117755346 (col4a2)
Exosome [BR:
hhip04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
117755346 (col4a2)
Glycosaminoglycan binding proteins [BR:
hhip00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117755346 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
117755346
NCBI-ProteinID:
XP_034430948
LinkDB
All DBs
Position
21:complement(18724275..18781247)
Genome browser
AA seq
1673 aa
AA seq
DB search
MQGQHTGGLKSLRLLLLCLFCAILVSGAHAGGKKHSGPCGGRDCSGDCKCFPEKGGRGQP
GPVGPQGPHGPTGRPGDHGIQGQKGHKGDGGRGGIIGPKGSVGQTGVPGFSGNDGIPGHP
GQAGPRGRPGADGCNGTKGDSGLSRQPGYNGSPGFPGQSGRKGEKGDSLELSVYMQRFRG
DPGTPGMHGIFGPPGKPGWQGNRGFPGPKGPPGGPGPRGPKGTMTKVFKGIRGDQGDIGL
PGVQGNSTHPHSGPPYGPHYGVKGSPGEKGLKGESGDVDQGETGVMGFTGSRGEPGADGR
PGPRGDSGDAGPRGRDGYKGVRGEPGELITSGSSWSPAGGPPGPFGERGPHGERGPVGDQ
GFPGPTGRPASDTQQQVWDFFGPFGIKGEQGEKGPEGEPGSPAVSVGPPGAKGRPGSMGS
RGRTQTWDEVFKGAPGGRGRPGNAGYKGVKGDHGECECSVVNSPSGPPGPVGNPGDPGMT
GEFGQEGDSGDPGPRGNDGSTGSSGFNGEPGPKGQKGKASVATQKGYPGDLGDPGRDGEP
GAQGVPGLNGLPGFPGSQGPPGEGPWGERGDKGFLGLPGQPGVAGQRGEPGAVLGALKGQ
RGLPGDDGLAGYHGVPGTTGSPGGCSPTGAGGQVDVTGPCNTLPGPPGQPGLPGPTGLPG
FQGLQGQKGPRGILGVHGEKGETGEQGVGGRPGPPGFPGPRGEVGFPGSIGSLGVPGSSG
MPGRHGGQGEKGFHGEIIGASPGGSGDSGLIGLQGNKGQTGNQGDPGHPGMGGMPGMIGF
KGESGPRGLQGEQGRPGPAGKYGYPGDPGQAGQPGPHGATGQPGFTGERGSEGESGPPGP
IGLKGMPGGYGDDGVLGEYGSSGNPGEPGADGRPGAPGMKGYKGSSGMSGFEGSRGYPGG
KGFGGLPGEPGVPGQVGLKGVTGQSGLKGERGVSGPSGEKPQIPAKMIVDMKGVKGERGH
RGNQGFIGPRGSKGFHGFPGSGGTHGLPGDPSNDKGYYGDPGAQGLPGIKGMPGPTGNRG
ISGFQGMSGNRGIKGSPGAYGATGDKGRKGVRGDKGLHIDLPGPTGLRGEDGFQGVLGQT
GLIGYTGDRGATGFDGIEGKKGYSGVPGISGQGGSDGQRGTPGNQGQKGFPGIPGEDGRP
GFPGFPGNKGFIGLKGLYGLHGLKGQKGIPGTPGLDIVGPAGEPGVKGGKGESGDPNSQP
GFPGTVGLKGFQGTLGDQGHPGPPGFRGPTGPDGTPDRPGESGDPGFIGREGLPGFPGPR
GFPGVDAPPGEKGISGSNGYPGVNGVKGSKGYQGSVGFRGPSGVSGKKGVKGGQGMMGVP
GHTGVKGERGPVGPKGNTGEPGYRGYPGSQGPAPLPDRVPGERGPAGPQGFHGPVGVRGD
IGPQGPPGDAGFMGPIGQKGMPGISGTPGTSGFRGEVGRMGHPGLQGMEGRRGSPGISGL
PGMAGRSVSVGYLLVKHSQSEQTPMCPVGMSKLWNGYSLLYLEGQEKAHNQDLGLAGSCL
PRFSTMPFLYCNPGDLCYYASRNDKSYWLSTTAPLPMMPVEEGEIKPYISRCSVCEAPSV
AIAVHSQDITIPQCPAGWRSLWIGYSYLMHTAAGNEGGGQSLSSPGSCLEDFRTTPFIEC
NGAKGTCHYFANKQSFWLTSIDQSFHANPASETLKAGQLLSRISRCQVCMKNL
NT seq
5022 nt
NT seq
+upstream
nt +downstream
nt
atgcagggccaacacaccggaggactgaagagcctgaggctgctgcttctgtgcctcttc
tgcgccatccttgtctcaggagcgcacgcgggtgggaagaagcacagcggcccctgcgga
ggaagagactgcagcggagattgtaaatgtttcccagagaagggtggcaggggtcaacct
gggcctgttggtccccagggtccacacgggcctacgggaagaccaggtgatcacggcatc
cagggacaaaagggccacaaaggcgacggtggccgtggtggcatcataggtcctaaagga
agcgtgggacaaaccggcgttcctgggttttcaggaaacgatggcatacctggacaccca
ggacaagctgggcccagagggaggccaggtgctgacggttgtaacgggacaaagggagac
tcaggtttatcgcgacaacctggttataatggctcacctggttttcctggacaatccggc
aggaagggagagaagggagactctctggagctgagtgtgtacatgcagcgtttcagggga
gatcccggcacaccagggatgcacggaatatttgggcctccaggaaagccaggatggcag
ggtaacagaggcttcccaggaccaaagggtcccccagggggtccaggtccacgaggacca
aagggcaccatgaccaaagtgtttaaaggaatcagaggagaccaaggggacattggactt
ccaggcgtgcaaggaaactccactcatcctcattctgggcccccctacggaccccactat
ggagtcaagggaagtcctggagaaaaaggtctgaaaggagaaagcggagatgtggaccaa
ggagaaactggtgtaatgggattcactggatcacggggtgaacctggcgcagatggcaga
cctggaccaaggggggattctggtgacgcaggaccaagaggcagagatggatataaggga
gtcagaggtgaaccaggagagctgatcacatctggatcctcatggtctccagcaggtgga
cctccgggtccctttggtgagcggggtccacatggagagaggggcccagtaggagatcaa
ggcttccccggacccacaggacgtcctgcctctgacacacagcaacaagtgtgggacttt
ttcgggccatttggcataaagggggaacaaggagagaagggcccagaaggggaaccaggg
agccctgcagtcagtgtaggacccccaggggccaaggggcgcccagggtccatgggctct
cgaggacgcacacaaacatgggatgaggtctttaagggggctccaggcgggagaggaagg
cccggcaacgcaggctataaaggagtgaaaggtgaccatggagaatgtgagtgcagtgtt
gtaaactctccatcgggaccacctggccctgttgggaatccaggtgatcctgggatgacg
ggagagttcggtcaggagggtgattcaggagacccaggtccccggggcaatgatgggtcc
actggctcttctgggttcaatggggaaccggggccaaaaggccaaaaaggaaaagcaagt
gtggccacacagaaaggatatcctggagatctgggggatcctggaagagacggtgagccg
ggagcacaaggtgttccaggcctaaacggtttacctggtttccctggtagccaaggtcct
ccgggagaaggtccctggggagaacgtggagacaaaggtttcctaggtctacctggtcaa
cccggtgtagccgggcagaggggagagccaggtgccgtccttggggccctcaaaggccag
cgtggtttacctggtgatgacggtcttgcaggctatcatggagttcctggaacaactggc
agtccaggcggctgtagtccgacaggagctggaggacaggtggatgtaacaggtccttgt
aatacacttccaggacctcctgggcagcctggacttccaggacccactggattaccaggt
ttccaaggtctacaaggccaaaaaggaccacggggtatacttggagttcacggagagaaa
ggagaaacaggagagcaaggcgtgggtggccgtcctggaccaccaggttttcccggccca
cgtggtgaagtgggatttcctggcagcataggttcacttggtgtccctggttcatccggt
atgcccgggcgacacgggggacaaggtgagaagggttttcatggagagatcatcggggct
tcacctggaggcagcggtgattctgggctgattgggcttcaaggaaataagggccagact
gggaatcaaggagatcccggacatccaggaatgggtggcatgcctggaatgattggcttc
aaaggagagagtggacctagaggactgcagggggagcaagggaggcctgggcctgctggc
aagtatggctaccccggtgatcctgggcaagcaggtcaacctgggcctcatggtgctact
ggacagccaggtttcactggagagaggggaagtgaaggagaatcaggccctccaggtccc
atcggattaaaaggaatgcctggggggtacggtgatgacggtgtccttggagagtatggc
tcatctggtaatcctggagagccaggtgcagatggacgcccaggagccccaggaatgaag
ggatataaaggatcttccggcatgtcaggcttcgaggggagcaggggttatcccgggggg
aagggcttcggggggctgccaggagaacctggagtgccaggccaagtcggcctaaaagga
gtgacaggtcaaagtggactgaagggtgaacgtggtgtgagtggtccatcaggggagaag
cctcagatccctgccaagatgattgttgacatgaagggtgtcaagggagagcgcggacat
cgaggaaatcaaggtttcatcgggccaagaggttctaagggttttcatggttttcctggc
agcgggggaactcatggtttacctggagatcccagcaatgacaaaggatactacggagat
ccaggtgcacaggggctccctgggatcaagggaatgccaggcccgactggcaatcgagga
atttctggttttcaaggaatgtcgggaaacaggggaattaaaggaagtcccggtgcctat
ggtgcaacaggagacaaaggcaggaagggggtcagaggtgataaaggtcttcatatagac
cttccaggacccaccggactgagaggagaggacggcttccaaggagttctcggccaaaca
ggactgattggatacactggggacaggggtgctactggttttgatggtattgaagggaaa
aagggctattcaggtgttccaggaatatcaggacaaggaggctcagacgggcagagggga
actcctggtaaccagggtcaaaaaggctttcctggaattcctggagaagatggccgcccg
ggttttcctgggtttccaggcaacaaaggtttcattggcctgaagggcctttatggatta
catggactgaaaggacagaagggtatcccaggaacaccaggtctggatatcgttggacca
gctggcgagcccggagtcaaaggaggaaagggagagagcggtgaccccaacagccagccg
ggctttccaggaactgtgggtttgaaaggcttccagggaactctaggggaccagggtcat
ccagggccaccaggattccggggccccactgggccagatgggaccccagacaggccagga
gagagtggggaccctggttttataggacgtgaaggattaccaggtttccctggaccaaga
ggatttcccggcgtggacgctccccctggagaaaagggcatatcaggaagtaatgggtat
cctggagttaatggtgtaaaaggatccaaaggatatcaaggttcagttggattcaggggg
cctagtggtgtttctgggaagaaaggtgtgaaaggggggcaagggatgatgggagttcct
ggtcatactggagtgaagggagaaagaggaccagttggtccaaaaggaaacactggggaa
ccaggttaccgtgggtacccaggaagccagggtcctgctccacttcccgacagagtcccg
ggagagaggggccctgcaggaccacagggtttccatggaccggtgggggtgagaggggat
atagggccacagggtcctcctggtgatgcaggtttcatgggacccattgggcagaagggc
atgcccgggatcagtggaacaccaggaacatctggattccgtggagaggtcggaagaatg
ggccaccccggtctgcaaggcatggaaggtcgccgtggcagccctgggatctccgggtta
cctggcatggcgggccgcagtgtcagtgtcggctacttactggttaagcacagtcagtca
gaacagacgcccatgtgtccagtgggtatgtccaaactgtggaacggctacagtctgctg
tacctcgagggccaggaaaaagcccacaaccaggacctcggtttggccggctcctgcctc
ccccgcttcagcaccatgcctttcctctactgcaatcctggagacctgtgttactacgcc
agcagaaatgataagtcctactggctgtcgacaacggcccctcttcccatgatgcccgtg
gaagagggagaaattaaaccctacatcagccgctgctcggtatgtgaagctccgtcagtt
gccatcgcagtccacagccaggacatcaccatcccacagtgtccggccggctggcgcagc
ctgtggatcggttactcctacctcatgcacacagcagcaggaaacgagggcggaggtcag
tccctgtcatcgcccggctcctgcctggaggacttccgcacgacaccgttcatcgagtgt
aacggagccaaagggacgtgccactactttgctaacaagcagagcttctggctaacctcc
atcgatcagtcgttccacgctaacccagcatcagagactctgaaagcaggccagctcctg
tcacgcatcagccgctgccaggtctgcatgaagaacttgtga
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