Hippoglossus hippoglossus (Atlantic halibut): 117766341
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Entry
117766341 CDS
T07778
Symbol
col5a3a
Name
(RefSeq) collagen, type V, alpha 3a isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117766341 (col5a3a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
hhip00536
]
117766341 (col5a3a)
Glycosaminoglycan binding proteins [BR:
hhip00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117766341 (col5a3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
117766341
NCBI-ProteinID:
XP_034449171
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All DBs
Position
8:6134025..6181892
Genome browser
AA seq
1936 aa
AA seq
DB search
MRGDRAILRGATTTTKNFSNNQASGTTDWLHSIVSLCAYGCVVPADRTCAVSNFVFAEAE
QRGSARARMEHLIRTRARRRISLFVFILLHVTTTQAADPIDVLRVLELSENMEGVSLEAG
LCTSRRGVEETDLAYKIEKKIQLSAPTKQLYPDSQFPEAFSLMATVRAKKGSQFFLLSVY
DDQGVQQLGLEVGRSPVFLYEDQRGQPPPQMYPIFKKINLADGKWHRIAYSVQGKSVTLY
LDCQKVETLDLQRGDNAVVSTEGVTVFGTRLLDEGVFEGVIQQLLIDEDAQAAADYCVNY
IPDCDSALPYNIQALDLQEKSRLGSDALMPSAEPDEPKEVSKKDRKGKKNKKKRDKGSKG
KRKGKGKKGSRKKKHQEEGLEDGLLQVSTTLPEYLSQEPFQPTELPEIKSTQETATPADV
FDENLMEMPTHEPDFANEAPTVVPSALPESVVTEEESKPVKRPVVEEYEDDLLYDDLSVS
TVTLGPNITDYEILEYENGKNDTESEYEEYEIYEDGFDFAERERAQTWDGEAGRRAEKGQ
KGEPAIIEPGMLVEGPPGLPGPEGLAGPAGPTGPPGPRGDPGELGPPGRPGLAGVDGIPG
PPGTLLMLPFQYGGDSQKGPVVSPQEAQAQAILQQAQLSMKGPPGTMGLAGRPGPQGLPG
SSGLKGDIGDSGHSGTRGFPGTPGINGKAGKRGRAGVDGGRGAPGETGSKGDRGFDGLPG
ITGIQGHRGDRGKPGPYGPVGESGEKGSEGPVGPGGQPGESGPRGLVGPRGPPGPPGQPG
IRGTDGVQGSKGNLGPPGDIGSPGQQGNPGVQGLTGPQGPIGLPGEKGPQGKQGMLGLSG
IDGPPGHPGREGPAGEKGIQGLTGIHGPVGYPGTRGVKGADGVRGLKGSKGEKGEDGFPG
FKGDMGLKGDRGDNGALGARGEDGPEGLKGQVGPLGEAGALGIAGEKGKLGIPGLPGYLG
RQGPKGSLGFPGLAGVLGEKGRRGPAGQPGSGGQRGANGARGGRGAKGPTGKPGEKGSSG
QDGTSGSPGEQGPRGPQGRNGEPGTKGPNGPPGKDGLPGHPGQRGEPGFQGKNGPPGPPG
VVGPQGKSGETGPTGDRGHPGSPGPPGELGLPGAAGKEGTKGDPGPSGASGKSGPAGLQG
FRGSRGTPGAMGPAGLKGGEGLPGIAGSTGATGERGPAGSAGAIGQPGRPGGVGPAGPMG
EKGEPGEKGPVGPAGHDGEVGPLGLPGAAGPAGPPGEDGDKGETGGPGQKGSKGDKGESG
PPGPVGIQGPVGQSGPTGADGEPGPRGQQGMNGAKGDEGQRGFKGASGPSGLQGMPGPPG
EKGENGHVGSMGPPGQHGPRGPQGPNGGEGPHGTPGGVGQPGLVGEKGEDGEAGDPGSAG
QPGTVGARGDVGEKGDFGPPGASGPLGPRGVPGEDGSKGVLGPIGFPGDSGPTGEPGVNG
VDGVPGSKGDNGDPGNAGPPGASGEPGPSGPPGRRGQIGAAGKEGKQGMKGAKGTTGTTG
PVGKIGPVGPQGHPGRSGPEGLRGIPGPGGEQGLNGPPGQTGPPGPLGPPGLLGLKGDPG
TKGDKGHGGLIGLIGPPGESGEKGDRGLPGIEGTHGPKGDGGKSGQPGPTGPPGPPGLSG
AFGEKGSKGDTGTVGPRGDTGPAGPPGSPGLPATMIQPLPIREGRRKRRRHSDRAGGAAP
SREEDVDLDMDEFLQGDQPLEDAEGMEEVFATLSSMKNDVELMRRPLGTFESPARTCKEL
IMVQPHYKDGDYWIDPNQGCHRDSIKVYCNFTADGETCLYPDKRTEMVKLAAWNKETPGS
WYSQYRKGKQFSYDDRDGNPVHVVQLTFLKLLSATAKQSFTYTCQNSAGWFDSTSRSYQH
ALRIRGSNDEELTQAKSPFITAVHDGCQSRKGQERTVLEIDSPSAELLPIIDVAPVDFGR
GNQKFGFQVGRVCFNG
NT seq
5811 nt
NT seq
+upstream
nt +downstream
nt
atgagaggggacagagcgatactgagaggagccaccacaacaacaaaaaacttctccaac
aaccaagcaagtgggactacagactggcttcactccattgtttccctctgcgcatatggc
tgcgtagttcccgcagatagaacttgtgcagtgtcgaactttgtgtttgcggaggcagag
cagagggggtctgcgcgtgcaaggatggaacatttaataaggaccagggcgcgcaggaga
atatcgctgtttgttttcatcctgctccatgtcacaacgacacaagctgctgatcccatc
gatgttctgcgagtgctggagctgtcagagaacatggagggggtgtcgctggaggccggt
ctgtgcaccagcaggaggggcgtggaggagacggacctggcctacaagatagaaaaaaag
atccagctcagcgctcccaccaaacagctctaccctgattcccaattccctgaggccttc
tccttgatggccacggtgcgagctaaaaagggctcccagttcttcctgctctcggtgtat
gatgaccagggggtgcagcagctggggctcgaggtgggccgttcgcccgtcttcctttat
gaggaccaacgtgggcagcccccgccacagatgtaccccatcttcaagaagatcaacctc
gccgatggaaaatggcacaggatagcctacagcgtgcagggcaagtctgtgaccctctac
ttggactgccagaaggtggagaccctggatctgcagcgaggggacaatgctgtcgtcagc
acagagggcgtcactgtattcggaacacggctgctggacgaaggcgtattcgagggagtt
attcaacaactactgattgacgaggacgctcaggccgctgccgactactgtgtaaactac
ataccagactgtgactctgctttgccgtacaacatccaagccctagacctgcaggagaag
tcccgacttgggtctgatgccttgatgccaagtgctgagccggatgaaccaaaggaggtc
tccaaaaaggacaggaaaggcaaaaagaacaaaaagaagagagacaagggctcgaaaggc
aaacgcaaaggcaagggcaagaagggatccagaaagaaaaaacaccaggaggagggtctt
gaggacggcttgctccaagtgtccacaacactgcctgagtatctatctcaagaacccttt
cagcccactgagttgccagaaattaaaagcacccaagaaactgccactcccgccgatgtc
ttcgacgagaacctcatggagatgcccacacacgaacctgacttcgcaaacgaggccccc
accgtggtgcccagtgcattgcctgaatcagtggttactgaggaggagagcaaaccagtg
aagaggccagtggtggaagagtatgaagatgatcttctgtatgatgatctctcagtttcc
acggtaacactgggaccaaacattacagattatgagattctcgaatatgaaaatggcaag
aacgacacagagtcggagtatgaggagtatgaaatatacgaggatggctttgactttgca
gagcgggaaagggcacagacgtgggacggagaggctggccgcagagcggagaaaggccag
aagggagagccagctatcattgaaccgggtatgctagtggagggaccaccaggtctaccg
gggccagaggggcttgccggcccagctggaccaacaggacctccaggaccaagaggagat
cctggcgaattgggtccccctggacgtcctggtcttgctggggttgatgggattccaggt
cctccagggaccctgctgatgctaccattccagtatggaggtgattctcagaagggacca
gtggtgtctccccaggaggctcaggcacaagctatcctgcaacaggcccagctgtcaatg
aagggacctccaggtacaatgggtctcgcagggcgaccaggcccacagggtcttccaggg
tcgtctgggctcaaaggagacatcggagacagtggccattctggaacacgtgggtttccg
ggcactcctggaattaatggaaaggctggaaaaaggggccgtgcgggagtggatggaggt
cgcggtgctccaggtgaaacaggctctaagggtgacaggggctttgacggcctgccaggt
atcacaggaatccagggacacaggggcgacagaggaaagccgggtccttatgggcctgtc
ggggagtctggagaaaagggatccgaaggacctgtggggccaggagggcaaccgggcgaa
tctggtcctcggggtcttgttgggccgagggggccacctggcccacctggccaaccaggt
attcgtggaactgatggagtacaaggctcaaagggcaacctgggtccacctggagatata
gggtccccaggtcagcagggaaatccaggagtacagggcttgactggtcctcagggtccc
atcggattgccaggagaaaagggtccccaggggaaacaaggcatgctgggactgtcaggc
attgatggccctcctggtcacccaggaagagagggccccgcgggagagaaaggaatccaa
ggtttaacaggcattcacggacctgttgggtacccggggacccgcggagtcaagggagca
gatggagttaggggtcttaaagggagcaaaggagagaagggtgaagatggcttccctggg
ttcaagggtgacatggggctcaagggagacaggggcgataatggcgctctgggtgctcgt
ggagaggacggaccggaggggctgaagggccaagtggggcccttgggagaagcaggggct
cttgggatcgctggcgaaaagggcaaacttggcattcctggattgccaggatacctgggg
agacaaggtcctaagggatcacttggcttccctggtttggcgggggtcctgggagagaaa
ggacgaaggggtccagctggtcaaccagggtctgggggccaaaggggtgcaaatggagcc
cgagggggaagaggagcaaagggacccactggaaagcctggagaaaagggttcttctggg
caagatggtacttcaggatcccccggagaacaggggccccgaggaccacagggaagaaac
ggcgaaccaggaactaaaggccctaatggtccaccaggaaaggatggattaccaggtcat
ccaggccagagaggcgaaccaggtttccaaggcaagaacggcccccctggcccccccggt
gtcgttggaccacagggcaaatctggtgagacggggccaactggagatagaggccatcca
ggttcaccaggaccgcccggtgagcttggtttgccgggagctgccggaaaggagggtacc
aagggagacccaggaccgtcaggagcctccgggaaaagtggccctgctgggctccaaggc
ttcagagggagcagagggacacctggtgccatgggacctgcaggtctgaagggaggagag
ggtctacctggtattgctggatcgactggtgctactggagagaggggccccgctgggtcg
gctggcgctatcgggcagccagggcggcccggtggcgtgggtcctgctgggccgatggga
gagaaaggcgagccgggagaaaaggggcctgtgggcccggctgggcatgatggggaagtt
ggacctttagggctgccaggagctgcaggacctgctggacctccaggagaggacggagac
aagggagaaacaggaggaccaggccagaagggcagcaaaggagacaaaggagaatctgga
cccccaggtcctgttgggattcaaggacctgtgggccagtcaggaccaacaggcgcagat
ggtgaaccaggtcctcgtgggcagcagggaatgaacggagcgaaaggagatgaaggacaa
agaggctttaagggggcatctggtccttctggactacagggaatgccaggaccaccaggg
gagaagggagagaacggacatgttggctcgatgggacccccaggacagcatggcccacga
ggccctcaggggcccaatggtggagagggtccacacggaacgcctggtggagttggtcag
cctggacttgttggagagaagggtgaggacggtgaggctggagaccctggatcagcagga
cagcctggcacggttggtgctagaggcgatgtgggggagaagggtgactttggccctccc
ggtgcatctgggcctctgggacccagaggagtaccaggcgaggacggatccaaaggcgtc
cttggcccaattggatttcctggagattcaggaccaaccggagaacctggcgtcaatggg
gtagatggtgtaccagggtctaagggagacaatggagatcctggcaatgcaggaccccct
ggagcctctggagagccaggtccctcaggacctcctggtcggaggggtcagataggggct
gcaggaaaagaagggaagcaaggcatgaagggagccaaggggacaacaggaaccacaggt
ccagtaggtaagataggccctgtgggaccccaaggccatccaggaaggtctggtccagaa
ggtcttcgaggcatcccaggtcctgggggtgaacaagggttaaatgggccaccaggacaa
actggaccaccaggaccattagggccacctggacttctaggattaaaaggagaccctgga
acgaagggagataaaggtcatggtgggctgatcggtctaattggccccccaggagagtct
ggtgagaagggagacagaggcctgccagggatagagggtacacatggacctaaaggagat
gggggaaagtccggccaacctggtcccaccggcccaccaggaccacccggactatcaggt
gcttttggtgagaaaggatcaaagggagacacgggtaccgttggtcccagaggtgataca
ggccctgctggccccccaggttccccgggactccccgcgacaatgattcagcccctgcct
atcagggagggcaggcggaagagacggaggcactctgatcgcgcaggaggggcagccccg
tccagggaggaggatgtggatctggacatggacgagttccttcagggggatcagcctcta
gaggacgcagagggaatggaagaagtctttgctaccctgtcttctatgaaaaacgatgtc
gagttgatgaggaggcctttgggaacctttgagagccctgctcggacctgcaaagagctc
ataatggttcagcctcactacaaagatggtgactactggatagatcctaaccagggctgt
caccgcgactccatcaaggtctactgcaacttcacagctgacggagagacatgtctctac
cctgacaagaggacagagatggtgaaattagcggcgtggaacaaagagacgccaggaagc
tggtacagccaatacaggaaaggaaagcagttctcctacgacgacagggatgggaaccct
gtgcatgtagttcagctgaccttcctgaaactactgagtgccacggccaagcagagcttc
acctacacgtgccagaactcggcgggctggttcgacagcacgtcccgctcctaccagcac
gccctccgcatcaggggcagcaacgatgaggagctgacacaagccaaaagtcccttcatc
accgctgtgcatgacggatgccagtctcgaaaaggtcaggagaggacggttctagagatc
gactccccctcggcagagctgctccccatcatagatgtggctccggtcgattttggccgc
ggcaaccagaagttcggattccaagttggacgagtatgcttcaatggttaa
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