Hippoglossus hippoglossus (Atlantic halibut): 117770412
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Entry
117770412 CDS
T07778
Name
(RefSeq) collagen alpha-1(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04510
Focal adhesion
hhip04512
ECM-receptor interaction
hhip04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117770412
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117770412
09142 Cell motility
04820 Cytoskeleton in muscle cells
117770412
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
hhip00535
]
117770412
Proteoglycans [BR:
hhip00535
]
Extracellular matrix (ECM) proteoglycans
Others
117770412
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
117770412
NCBI-ProteinID:
XP_034455745
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All DBs
Position
11:17568068..17592186
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AA seq
949 aa
AA seq
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MAFLSSASTRKRPWHLSMAACPTFCVALLSLLLAPALGQLDLNRLDGDTVCPPMRGGQDD
LPGFDLITQFQLDVITLRGVRKVDGSTPLQVAYRLDREANFQIPTMLNFPRGFPDEYSFM
VTFRMIKNTVNKVWNVWQIVDEDGNKQAGMRLNGDQQALEYFLMGADGYLQTVTFPGLSV
LFNTKWHKVMIGVERDQVTLYVDCQPVDQKPIKGKGPVNTEGDTLIGRLDADPDASVVFE
LQWMLIHCDPKRAQRESCSELPATEMYANAEPDKSVQGPPGVPGPEGPRGDPGEDGRDGR
DGLPGATGSPGTSGSKGEQGEIGLPGQRGLSGLPGVNGLSGPMGPRGSVGERGLPGFPGP
AGPPGPTSEGPAGPAGKPGIPGDEGNIGPEGPAGPRGGQGTPGPPGTPGLPGPVGPPGAS
NEGTGEPCPAACPAGPRGMAGLPGLKGNKGLDGEPGKDGTPGEKGEGGASGPQGTPGRMG
DDGQRGPIGFPGNAGEKGDRGPPGFNGVPGPTGPPGAPGVEGIRGRQGLPGTKGDDGAVG
GQGEQGPSGGKGEVGEPGKDGLNGLSGSDGAKGESGTPGSVGVRGIVGIPGLPGKQGVVG
PSGEKGDTGDEGPGGPVGLPGKIGETGNDGEDGKTGDKGATGGTGKQGPVGPTGPPGIEG
DKGDKGETGAKGIKGHTGFKGDQGPMGPMGPNGSQGDTGMAGDSGVKGDQGPPGVPGIRG
ERGEQGQRGASGIDGRPGQTGHEGLAGPMGARGLDGEPGHAGTPGPRGVPGPKVTDDKLR
EMCSAVVEEQLAEFRKELLQKPAALGAAGTPGPAGPAGPEGPAGAAGAAGAPGPSGPKGH
PGYFGLPGIPGKKGDAGEMGDKGDKGEDGVGVKGSSGAPGASGAPGAPGIGTDGKNGERG
ESGSPGVPGTSGPRGPSGQPGLCDPSTCISRIPPHYMVSGKKSASYKNP
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atggccttcctcagctccgcctcgaccagaaagcgaccatggcatctatcgatggcggcg
tgccccactttctgtgtggctctgctctccctgctcctcgctccagcacttggacaactc
gacctcaatcggctggatggtgataccgtctgcccaccaatgagaggcggacaagatgac
cttccaggttttgatctgatcactcagttccagctggatgtgatcaccctgagaggcgtg
cggaaggtggacggctccactcccctccaggtggcctaccgcctcgaccgggaggccaat
ttccaaattccaaccatgctaaacttccctcgtggcttcccagacgagtactccttcatg
gtgaccttccgcatgatcaagaacacagtgaacaaggtgtggaacgtctggcaaatagtg
gatgaagacggcaacaaacaagccggaatgaggctgaatggcgaccagcaggctctggag
tacttcctgatgggcgccgacggctacctgcagaccgtcaccttccccggcctctctgtg
ctcttcaacaccaagtggcacaaggtgatgatcggcgtggagcgcgaccaggtcactctg
tacgtggactgccagcccgtggatcagaaacccatcaagggcaaaggtcccgtcaacaca
gagggagacactcttattggcaggctggatgctgatcctgacgcctccgttgtgtttgag
ctccagtggatgttgattcactgcgacccaaagagagcccagagagagagctgcagtgag
ctgcctgccaccgagatgtatgccaatgctgagcctgacaaatcagtccaaggcccccca
ggagtccctggcccagagggcccccgaggggacccgggagaagacggcagagatggaaga
gatggtcttccaggagctactggcagtcccggcacttctggcagcaaaggggagcagggg
gagatcggtcttcccgggcagagaggcctgtctggtcttccaggagtcaatggtctttct
ggtccaatgggtcccagagggtctgtgggagagagaggtctaccaggttttcctggacct
gctggtcctcctggcccaacaagcgaaggacctgctggacctgcaggaaaacccggaatc
ccaggagatgaaggaaatatcgggcctgagggtccagctggacccagagggggacaaggg
accccggggcctcctggcactcctggtctgccagggcctgtgggaccgcctggtgccagc
aatgaggggactggggaaccttgtcctgctgcctgtcctgctggacctcgggggatggct
ggactaccagggctgaagggtaacaaaggtttggatggtgaacctggaaaagacggaacc
cctggagagaagggagaaggtggagcaagtggtcctcaggggacaccaggtcgcatggga
gatgatggtcaacgagggcccattggattccctggaaatgctggagagaagggagacaga
ggtcctcctggtttcaatggtgtcccaggacctacaggcccgcctggagctcctggtgtg
gagggaatccgtggacgtcagggtttgccagggaccaagggtgatgatggagctgtggga
gggcagggagagcagggaccttcagggggaaaaggagaagttggagagcctggcaaagat
ggcttaaatggactctctggatctgatggcgctaagggagagtctggaacccctggatct
gttggtgtcagggggattgtgggtattcccggactgccagggaagcagggagtagtcgga
ccctctggtgaaaagggtgatactggtgatgagggacccggcggaccagttggacttcct
ggaaagattggtgagactggcaatgatggagaagatggaaaaacaggagataaaggagca
actggtggaacaggaaaacaagggccagtggggcctacaggtcctccgggaatcgaggga
gacaaaggagataaaggtgagactggtgccaagggaataaagggtcatactggattcaaa
ggagatcagggaccaatgggacctatgggaccaaatggaagtcagggtgacacagggatg
gcaggagattccggggtgaagggagaccagggccctcctggtgttcctggaatcagagga
gagcgtggagagcaaggccagagaggagcatcagggatcgatggccgaccaggtcagacg
ggccacgagggtttggctggtccaatgggagccagagggctggacggagaaccaggccat
gctggaacgccaggtcccagaggtgtacctggcccaaaggtgaccgacgacaagcttcgg
gaaatgtgctcagccgttgtagaagaacaattggcagagtttaggaaagagcttctgcag
aagccagcagcccttggagccgctggtacccctggaccagcaggacctgctggccccgaa
ggaccagccggagcagcaggagcagcaggagctccaggaccctcgggtcctaaaggtcat
ccaggctactttggacttccaggcataccaggcaagaaaggtgatgctggagaaatggga
gacaagggagacaagggagaggatggagtaggagtcaaaggcagctcaggtgcacccggt
gcatcaggtgcaccaggtgcccccggcattggcacagatggcaaaaatggcgaacgtggt
gagagtgggagtcccggtgtcccaggaacatctggtccaaggggaccctcaggacagccc
ggcctttgtgacccatcaacctgtataagccgaattccacctcactatatggtcagtggc
aagaaatctgccagctacaaaaacccgtga
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