Herbaspirillum hiltneri: F506_12900
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Entry
F506_12900 CDS
T04039
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
hht
Herbaspirillum hiltneri
Pathway
hht03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hht00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
F506_12900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hht03400
]
F506_12900
Enzymes [BR:
hht01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
F506_12900
DNA repair and recombination proteins [BR:
hht03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
F506_12900
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AKZ63451
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Position
2835863..2838421
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AA seq
852 aa
AA seq
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MSLARYRAKRDFRITPEPPPATRRSGKMLSYFIQRHHARALHYDFRLEVGGVLKSWAVPK
GPSLDPHDKRLAVHVEDHPYDYGSFEGRIPEHQYGAGEVVLWDRGEWLPIGDPVAGLKKG
HLEFELRGVKLNGRWNLVRMGKPAEKDSKSKENWLLIKEKDDAAREGKQADITGLRPESV
ADALPPKAVKPAAKAAETTPKNRRNAHRAAMPAKLDVQLATLAEHAPDGDEWLSEMKFDG
YRGLCRIEGGEARIFTREHLDWSKRWPQLTQALAALDVDEAWIDGEVVALLEGGSISFEA
LQDQAGYGGVTLALYVFDLLWLNGEDLRDTPLLERKRRLREVVPGVDGSGLIRFSEHIVG
DAAEVYRHACLHGMEGTVVKRIDAAYAGRRDRSWLKLKCALRQEFVIAGYTDPAGSRVGF
GALLVGVHDAATGELHYAGRVGTGFDDRNLAQLLKRFKTLERDQPAFVDPPRGRLAHGVH
WLAPKLVAEVKFAQWTKSGILRHGAFVALREDKKAGDIVRERKDATPDVPDAPDATAASG
KSCKSAKAGSAGGVIAGVRLTHPDKLLFTDPHLSKRDLAEYYASIADWLLPHVQRRPMTM
VRCPDGSAGKCFFQRHLGQGAPDAVEKIEVPEGKGSADYMMVNDVAGLVATVQMGVLELH
TWGSREGKLTQPDRVVFDLDPAPDVPWGKVVDGARLVHGLLEEIGLRSFVKTSGGKGLHV
VVPIVPEQDWDVVKEWSRSLATHMAEVLPDYFTAKMAKVARNGKIYIDYLRNGIGATTVA
AYSPRARPGAPVSVPLTWDELSARTKADSFNVATVPKRLASLKRDPWHDYAGTKQRLTKK
ILSLFPTEEESA
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atgagcctggcccgctatcgcgccaagcgtgatttcaggatcacgcccgagccgccgccg
gccacgcgccggtccggcaagatgctcagctacttcattcagcgccatcacgcccgcgct
ttgcactacgacttccgcctcgaagtgggcggcgtgctcaaaagctgggcggtgccgaaa
ggtcccagcctggacccgcacgacaagcgcctggcggtgcacgtggaagaccatccctac
gactacggcagttttgaaggccgcattcccgagcaccagtacggcgccggcgaagtggtc
ctgtgggatcgcggggaatggctgccgatcggcgatccggtggccggcttgaaaaaagga
cacctggaattcgagctgcgcggcgtcaaactgaacgggcgctggaacctggtgcgcatg
ggcaagcccgcagaaaaagacagcaagagcaaggaaaactggctgttgatcaaggaaaag
gacgacgccgcacgcgaaggcaaacaggccgacatcaccggcttgcggccggaaagcgta
gcggatgcactgcctcccaaggccgtaaaacctgcagccaaggcggctgaaacaacgccg
aaaaaccgccggaacgcacatcgcgccgccatgccggccaagctcgacgtccagctggcg
acgctggccgaacacgcacccgacggcgacgaatggctcagcgaaatgaagttcgacggc
tatcgcgggttgtgccgcatcgagggcggcgaggcgcgcatctttacgcgcgagcatctc
gactggagcaagcgctggccgcaactgacccaggcgctggccgcgcttgacgtcgatgaa
gcctggatcgacggggaagtggtggcattgctggagggcggcagcatcagtttcgaagcc
ttgcaggaccaggccggctatggcggagtaacgttggccctgtacgtgttcgacctgctg
tggctcaacggcgaggacttgcgcgacacgccgctgctggagcgcaagcgccggctgcgc
gaagtggtgccgggggtggacggcagcgggctgatccgtttcagcgaacatatcgtcggc
gacgccgccgaagtctatcgccacgcctgcctgcacggcatggagggtaccgtggtcaag
cgcatcgatgccgcctatgcggggcggcgcgaccgcagctggctcaagctcaagtgcgcg
ctgcgccaggaattcgtcatcgccggctataccgatccggccggcagccgagtcggcttc
ggcgctttgctggtgggcgtgcatgatgcagcaaccggagagttgcactacgccggacgc
gtcggaaccggcttcgacgaccgcaatctggcgcaactgctcaagcgcttcaaaaccctg
gagcgcgatcagccggccttcgtcgatccgccgcgcggccggctggcgcatggcgtgcac
tggctggcgccgaagctggtggcggaggtgaagttcgcgcagtggaccaaatccggcatc
ctgcgtcacggcgcgttcgtggcgttgcgcgaggacaagaaggccggcgacatcgtgcgc
gagaggaaggacgctacgcctgatgttcctgatgctcctgatgcgacggcagcgtcagga
aaatcctgcaaatccgcgaaggccggatctgcaggcggcgttatcgcaggcgtgcgcctc
acccatcccgacaagttgctgttcactgatccgcacctgagcaaacgcgatctcgccgaa
tactacgccagcatcgccgactggctgctgccacacgtgcagcgacgcccgatgaccatg
gtgcgctgtcccgacggcagtgccggcaagtgcttcttccagcgccatctgggccaggga
gcgcctgacgccgtggagaagatcgaggtcccggaaggcaagggcagcgccgactacatg
atggtcaacgatgttgccggactggtcgctaccgtccagatgggcgtattggaactgcat
acctggggctcgcgcgagggcaagctgacgcaaccggaccgggtcgtcttcgatctcgat
ccggcgccggacgtcccgtggggcaaggtggttgacggcgcccggctggtgcacggcttg
ctggaagaaatcggcttgcgcagtttcgtcaagacctcgggcggcaagggcttgcacgtg
gtcgtaccgatcgtgccggaacaggactgggatgttgtcaaggaatggtcgcgtagcctc
gccacgcacatggcggaagtactgccggattacttcactgcaaagatggcgaaggtggcg
cgcaacggcaagatctacatcgattacctgcgcaacgggataggagccaccaccgtcgcc
gcgtattcgccgcgagcgcggccgggagcaccggtgtcggtaccgctgacctgggatgaa
ttgagcgccaggacaaaggcagacagcttcaatgtcgccaccgtgccgaaacggctggcc
tcgctcaagcgcgatccctggcatgactatgccggtacgaaacagcgcctaaccaagaag
attttgtcgttgttccctactgaagaggagtcagcatga
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