Hathewaya histolytica: NCTC503_01716
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Entry
NCTC503_01716 CDS
T05971
Symbol
dbpA
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hhw
Hathewaya histolytica
Pathway
hhw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hhw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC503_01716 (dbpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhw03019
]
NCTC503_01716 (dbpA)
03009 Ribosome biogenesis [BR:
hhw03009
]
NCTC503_01716 (dbpA)
Enzymes [BR:
hhw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC503_01716 (dbpA)
Messenger RNA biogenesis [BR:
hhw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC503_01716 (dbpA)
Ribosome biogenesis [BR:
hhw03009
]
Prokaryotic type
rRNA helicases
NCTC503_01716 (dbpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
Adenosine_kin
Terminase_6N
Flavi_DEAD
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
VTQ90996
UniProt:
A0A4U9RI85
LinkDB
All DBs
Position
1:complement(1687323..1688735)
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AA seq
470 aa
AA seq
DB search
MNRFEEFNLDKKILKSIQDIGYKNPSEVQIKAIPGILAGKDLIVKSQTGSGKTAAFSIPI
IENIEIEKNEIQALILTPTRELAVQVMDEINSLGLYKKVRAISLYGKQPMKVQRNQLSQR
VHIAVGTPGRVMDHIEKGNLHINNIKYFVIDEADEMLNMGFIEQVEDIINTLPKNRQTLM
FSATFSEEIKKIVKYHMINPEIVEINSEKLTVDKINQLYYEVREEDKIRLLKDIFKLKEI
NQGIIFCRTKKNVTSLFLDFKKEGYSICEIQGDMEQKDRLKALKDFKEGRYVFIVATDVA
SRGIDVSGVTHVINYDIPLELESYVHRIGRTGRAGNKGEAITFVTPYEQKFLKGIEEFIN
YNIPKEFPPSKEELEKANNTIQKRVIKKNTPSFEVVKITISSGKKKKTRRGDIVGVLAKD
IGIPADSIGVIDIFDNYSNVDILNGFAEKVLKNKEINIKGKPVKLYKSKE
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgaatagatttgaagagtttaatttagataaaaagatattaaaaagcatacaggatata
ggatataagaatccttccgaagttcaaattaaagctataccaggaatattagcaggaaaa
gatttaatagtaaaatcacaaaccggtagtggaaaaacagcagcattttctattccaatt
atagaaaacattgaaattgagaaaaatgaaattcaagctttaattttaacacctacaagg
gaactagctgttcaagttatggatgagataaattctcttggtctatataagaaagtgagg
gctatttcactatatggtaaacaacctatgaaagttcaaagaaatcaactttctcaaagg
gttcacatagcagtaggaactccaggaagagtgatggatcatatagagaaaggtaactta
catataaataatataaagtattttgttatagatgaagcagatgaaatgcttaatatggga
tttatagaacaagttgaagatattataaatactttacctaagaatagacaaacacttatg
ttttctgctacattttctgaggaaataaaaaaaattgtgaaatatcatatgataaatcca
gagatagttgagataaattctgaaaaacttactgtggataagataaatcaactttattat
gaggttagggaagaagataagataaggctattaaaggatatttttaaattaaaagaaatt
aatcaaggtatcatattttgcagaacaaagaaaaatgttacaagtctttttttagatttt
aaaaaagaaggatattctatttgcgaaattcagggagatatggaacaaaaagatagactt
aaggcattaaaagattttaaagaaggtagatatgtttttattgtagctacagatgtagcc
tcaagaggaattgatgtaagtggtgttactcatgttataaattatgatattcctttagaa
ttagaatcttatgttcatagaataggtcgaactggaagagcgggcaataaaggtgaagct
ataacttttgttactccttatgaacaaaaattcttaaaaggcatagaggaatttataaat
tataatattccaaaagaattcccccctagtaaggaagagttagagaaggcaaataataca
atacaaaagagagtaatcaaaaaaaatacgccttcttttgaagtagttaaaataacaatt
agtagtggaaaaaagaaaaagacacgtagaggtgatattgtaggagttttagctaaagat
ataggaataccagcggatagtataggtgttattgatatttttgataattatagtaatgtt
gatatattaaatggttttgcagaaaaagtacttaaaaataaagaaattaatataaaagga
aaacctgttaaactttataaaagtaaggaatag
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