Hathewaya histolytica: NCTC503_02520
Help
Entry
NCTC503_02520 CDS
T05971
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hhw
Hathewaya histolytica
Pathway
hhw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hhw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC503_02520 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hhw03400
]
NCTC503_02520 (mfd)
Enzymes [BR:
hhw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC503_02520 (mfd)
DNA repair and recombination proteins [BR:
hhw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NCTC503_02520 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
DUF1474
Motif
Other DBs
NCBI-ProteinID:
VTQ95426
UniProt:
A0A4U9RUV7
LinkDB
All DBs
Position
1:complement(2502853..2506377)
Genome browser
AA seq
1174 aa
AA seq
DB search
MRLKGLMQPLLESDKFLEINKNIDKNNFPVGIYGISESAKAYLISGLYNKINKPILIITH
SDVEARNLYEDLNLYIPNLSYFPTKELVFYNIDAISGDLRWERLRVLKEVLQGKNSVLIT
CVDALASVYTPVDLFKENIFKLSVGDILDIKELSEKLVQCGYERSLTVENKGQFSIRGGI
IDIFPPIADMPYRIELFDDEIDSIRTFSAETQRSIEKCYTIEIFPAKEIILYNENLNKGY
NAIKEDLNILSDKFKDSKKNEEVEKINGIIKSNLESLKERWSFETIDSYIPYFYEKTSTF
FDYFKGAFLVMDDPQRCSGKIESLYMEFNENYENFLSRGNILPRQGELIISRDMLKGILE
EKEMITVSSMPKTLKEFAPKSIVSFTQITLNDYHGQLDLLIDDIRDKKKKQYKILILSGT
KSRGQRLIDTLIDRGVESVYKDLVDEIHNGEVVVSYGSQLKSYDYPDLKLCVISDKGVFG
ESKRKLRSSKTSQKGISKIKSFTELKLGDYVVHVNHGIGVYRGIKQLEVGNHKKDYLQVA
YGGNDILYVPVEQLDLVQKYIGSEGKSPKVTKLSSAEWTKAKRKVKKSIEDIAEELIKLY
AARSILKGYAFSKDTVWQKQFEEEFPFQETPDQLTAIEDIKKDMQSNKPMDRLLCGDVGY
GKTEVALRAAFKSVMDGKQVAVLVPTTILAKQHYNNFLKRFSDFPVKIDMLSRFRTPAEQ
KKALQLLKEGNLDIIIGTHKILQKDVIFKDLGLLIVDEEQRFGVKHKEKVKELKKNIDVL
TLSATPIPRTLHMSLTGVRDISVIETPPEERYPIQTYVVEFNEQLIRDAILREISRDGQI
FFVYNRVETILDMSSYLHKLVPEARIAVAHGQMSERELENIMIDFIEQKYDLLLCTTIIE
TGIDVQNANTMIIYDADKMGLSQLYQLRGRVGRSNRLAYSYFTYKKDKVLTEVAEKRLKA
IKEFTELGSGFKIAMRDLEIRGAGNMMGSSQHGHMSSVGYDLYCRMLEDTISKIKGDIEK
EEIETTIEIKIDAYIPSGYIKDETQKIEVYKKIASISSMDELMDIQEEIEDRFSDIPVPV
NNLINIAYLKSVANSIGIVEIKEVKDRVNMQFLNKDKLSKDIIKKVLSEYRKELIIKMGE
EPIIAYNLKNIKKEDLLENLIKILKDFKSIVLNR
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgagattaaaaggattaatgcagccactactcgagagtgataagtttcttgaaataaat
aaaaatatagataagaataactttcctgtaggaatttatggcatatcagaatcagcaaaa
gcttatttaataagtggattatataataaaataaataagccaatactaattattactcac
agcgacgtagaggctagaaatctttatgaagatttaaacttatatatacctaatttaagt
tattttcccactaaagaattagtgttttataatatagatgctatttctggtgatttaaga
tgggaaagattacgggttttaaaagaagttctacaaggaaaaaatagtgtacttataact
tgtgtagatgcattagcttctgtttacacccctgtagatttatttaaagagaatatattt
aagctttcagtaggagatatattagatataaaagaattaagtgaaaagctcgttcaatgt
ggatatgaaagaagtctaactgttgagaataagggtcaattctctataagaggaggaata
atagatatattccctcctatagctgatatgccttatagaattgaacttttcgatgatgag
atagattctatcagaacatttagtgctgagacacagaggagtatagaaaagtgttatact
atagagatttttccagcaaaagagataattctttataatgaaaatcttaataaaggatat
aatgcgataaaagaagacttaaacattttatcagataaattcaaggatagtaagaaaaat
gaagaagtagaaaagataaatggaataataaagagtaatttagaatctttaaaagaaaga
tggagttttgagacaatagacagttatataccatatttctatgaaaaaacctcaactttt
tttgattactttaaaggtgcttttttagtaatggatgatccacagagatgttcgggtaaa
atagagagcctttatatggagttcaatgaaaactatgagaattttttgagcagaggaaat
atactacctagacaaggtgaattaattataagcagagatatgcttaaagggatattagaa
gaaaaagagatgattacagttagctctatgcctaaaactttaaaagaatttgctccaaaa
tccatagtatcctttactcaaataacattaaatgattatcatggacaacttgatctgcta
atagatgatattagagataaaaagaaaaagcaatataaaatattaatattatctggaact
aaaagtagaggacaaaggttaatagatactttaatagatagaggagtggaaagtgtttat
aaagatttagttgatgagatacataacggggaagtcgttgtaagctacggaagtcaacta
aaaagttatgattatccagatttaaagctttgtgttatatcagataaaggtgtttttggt
gaatctaaaagaaagttgagaagcagtaaaacgtctcaaaagggtatatcaaaaataaag
agttttactgaattaaagttaggtgactatgtagttcatgtaaaccacggtataggtgta
tatagaggaattaagcagcttgaagttggaaaccataaaaaagattatcttcaagttgcc
tatggcggtaatgatatactttacgtacctgtagaacaattggatcttgtacaaaaatat
atcggttcggaagggaaatcacctaaggttacaaagttaagtagtgctgagtggacaaag
gctaaacggaaagtaaaaaaatctatagaagatatagcagaagaattgataaaattgtat
gcagcaagaagtatactaaaaggttatgctttttcaaaggatactgtttggcaaaaacaa
tttgaggaggaatttccatttcaagagacccctgatcagctaactgctatagaagacata
aaaaaagatatgcaatccaataaacctatggataggctactttgtggggatgttggatat
ggaaaaactgaagtggcgctaagggctgcctttaaatccgtgatggatggcaaacaggtg
gcagttttagttcccacaactatattagcaaaacaacattataataattttttaaaaaga
tttagtgattttcctgtaaaaatagatatgctttctagatttaggacaccagctgaacaa
aagaaggcattacaattattaaaagaaggaaatttagatattattataggtacacataaa
atattacagaaagatgttatctttaaagatttaggtcttttgattgtagatgaagaacaa
agatttggagtgaaacataaggaaaaagtgaaagagttaaagaaaaacattgatgtccta
actttatcagcaacacctatcccaagaacattacatatgtccttgacaggggtgagggat
attagtgttatagaaactccaccagaagaaagatatccaattcaaacttatgttgttgaa
tttaatgaacaacttattagagatgcaattctaagggagattagtcgtgatggacagata
ttctttgtatacaacagggtagaaactatattagatatgagttcatatttgcataaatta
gttccggaagcaaggatagctgtggcacatgggcagatgagtgaacgggaattagaaaat
ataatgatagattttatagaacaaaaatatgaccttcttctatgtactacaattatagaa
actggtatagatgttcaaaatgctaacacaatgataatatatgatgcagataaaatggga
ttatctcagctttatcagctaagaggaagagttggacgttctaatagattagcttactca
tattttacttataaaaaagacaaagtcctaacagaggtagcagagaaaagattaaaagca
ataaaggaatttacagaactaggatctggttttaaaattgctatgagagatttagaaata
agaggtgcaggtaatatgatgggatcgtcccagcatggacatatgtcttctgttggatat
gatctatattgtcgtatgttagaagatactataagtaaaatcaagggtgatatagaaaaa
gaagaaattgaaacaaccatagaaattaaaatagatgcatatatccctagtggatatatt
aaggatgaaacacaaaaaatcgaagtttataaaaaaattgcatctatatcgtctatggat
gaattgatggatatacaagaagaaattgaagatagattctcagatattccagtaccagtt
aataatcttattaatatagcttacttaaaaagcgttgcaaattcaataggaatagtagaa
attaaagaggttaaagatagagttaatatgcagtttttaaataaagataagctttcaaaa
gatattattaaaaaagttttatctgaatatagaaaagaacttataattaaaatgggcgaa
gagcctataatagcttataatttaaaaaatataaaaaaggaagatttattggagaattta
ataaaaattctaaaagactttaaaagtatagttttaaataggtaa
DBGET
integrated database retrieval system
