Heterobasidion irregulare: HETIRDRAFT_237329
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Entry
HETIRDRAFT_237329 CDS
T03455
Name
(RefSeq) hypothetical protein
KO
K15542
polyadenylation factor subunit 2
Organism
hir
Heterobasidion irregulare
Pathway
hir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hir00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
HETIRDRAFT_237329
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hir03019
]
HETIRDRAFT_237329
Messenger RNA biogenesis [BR:
hir03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
HETIRDRAFT_237329
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
eIF2A
PROPPIN
NBCH_WD40
WDR54
Ge1_WD40
Coatomer_WDAD
IKI3
Motif
Other DBs
NCBI-GeneID:
20668775
NCBI-ProteinID:
XP_009542036
JGI:
Hetan2_237329
UniProt:
W4KH36
LinkDB
All DBs
Position
Unknown
AA seq
581 aa
AA seq
DB search
LPVLLPPEVIRVPQPASFSEWTPKSYLNAPQAPPMDDAKSHDLEMAAARQMMDGKALKKT
RPRRTVDYAGGMGRWNLLRKIQPSPRYVPYLRPSPPYIVDLLPPKAYPDNASTSLCTKFV
HTSTNKIRCPVNVVVWTPEGRRILTGSTSGEFTLWNGLTFNFETILQAHDNAIRAMQFTH
SGAYLASADQSGIIKYFQPNMNNLTAWQGHREAIRGLSFSPDDNRFATASDDSTLCIWSF
EESRRERVLTGHGWDVKCVEWHPTKGLLVSGSKDNQIKFWDPRTGTSLTTLHQHKNTIQA
LAWSPNGNLVASASRDQTTRVFDIRAMKEFCILRGHKKEVCSVTWHPVHPLLVTGGSEGS
LLHWDLSLPDPALPQTLSQPRATLSQAHDSNVWALVFHPLGHLLVSASNDHTTRFWSRER
PGDASSVFSGGGEKPPAVVDTSQQDEEEAMVPGFGGGWWAKDEEPQGFGLGPPGADGPYG
QRNGFGPGGGGGGGGQNGGQNGAEDEFVLPGLGGGAEGAGTFALGRQSGPLPPQEDVFGG
DAPTGHVYHGGGGGPGEEDWQQPRRGGGNRGQRWGPRRGRY
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
ttaccagtgcttctgccgccagaggtcatccgcgtgccacaaccagccagtttctctgaa
tggacgccaaagagctatttgaacgcaccgcaggctccacccatggacgacgcgaaaagc
catgatttagaaatggcggctgcgaggcagatgatggatggaaaggcgctcaagaagacg
cgaccgcggcggacggtggactatgctgggggcatgggccgttggaacctgttgcgcaag
atccaaccgagcccgagatatgtcccatatttgaggccaagtccaccttatatagtcgat
ctccttcctcccaaggcgtacccagacaacgcctccacctcgctgtgcaccaaattcgtc
cacacatccaccaacaaaatcagatgccccgtcaatgtcgtagtgtggacgccagaaggg
aggcggattctgacgggatccacgagcggcgagttcacgctctggaacgggctgacgttc
aacttcgagaccatcttgcaggcgcacgacaatgcgattcgcgcgatgcagttcacgcac
tctggcgcatatctggcgtccgcagaccagagcggcatcatcaagtactttcagcccaac
atgaacaacctgactgcgtggcagggccatcgcgaggccatccgcggtctcagcttcagc
ccggacgacaaccgtttcgcgaccgcaagcgacgattcgacgctctgcatctggtcgttt
gaggaaagccggagagagagagttctcacgggacacgggtgggacgtcaagtgcgtcgaa
tggcatcctaccaaagggctcctagtctctgggagcaaggataaccagatcaaattctgg
gatccgcgaacggggacctcgctcaccaccttacaccaacacaagaacaccatccaagcc
ctcgcctggtcgcccaacgggaacctcgtcgccagcgcgtcccgagaccagaccacccgc
gtgttcgacatccgcgcgatgaaggaattctgcatcctccgcgggcacaaaaaagaagtc
tgctcggtcacatggcaccccgtgcacccgctcctcgtcacgggcggctccgaaggctcg
ctgctgcactgggacctctccctgccggaccccgcgctcccacagacgctctcgcagccg
cgcgcgacgctctcacaggcgcacgactcgaacgtgtgggcgctcgtgttccacccgctc
gggcacctcctcgtgagcgcctccaacgaccacacgacgcgcttctggtcgcgcgagcgc
cccggcgacgcgtcctccgtgttttcgggcggcggggagaagccgcccgccgtcgtcgac
acgagccagcaggacgaggaggaggcgatggtgcccgggttcggcggcggctggtgggcg
aaggacgaggagccgcaggggttcgggctgggcccgccgggcgccgacgggccgtacggg
cagcgcaacgggttcgggcccggcggtggcggcggcggcggggggcagaacggcgggcag
aacggcgcagaggacgagtttgtgctccccgggctcggcggcggcgcggagggcgccggg
acgttcgcgttggggcgccagagcgggccgctgccgccgcaggaggacgtgtttgggggg
gacgcgccgacgggccacgtttatcatggtggcgggggtgggcccggagaggaggactgg
cagcagccgcgccggggcgggggcaatcggggacagaggtggggtccgcggagggggcgg
tat
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integrated database retrieval system