KEGG   Halostagnicola larsenii: HALLA_12600
Entry
HALLA_12600       CDS       T03008                                 
Name
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
hlr  Halostagnicola larsenii
Pathway
hlr03030  DNA replication
hlr03410  Base excision repair
hlr03420  Nucleotide excision repair
hlr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hlr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HALLA_12600
   03410 Base excision repair
    HALLA_12600
   03420 Nucleotide excision repair
    HALLA_12600
   03430 Mismatch repair
    HALLA_12600
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hlr03032]
    HALLA_12600
   03400 DNA repair and recombination proteins [BR:hlr03400]
    HALLA_12600
Enzymes [BR:hlr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     HALLA_12600
    6.5.1.6  DNA ligase (ATP or NAD+)
     HALLA_12600
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     HALLA_12600
DNA replication proteins [BR:hlr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    HALLA_12600
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     HALLA_12600
DNA repair and recombination proteins [BR:hlr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     HALLA_12600
   NER (nucleotide excision repair)
    Other NER factors
     HALLA_12600
   MMR (mismatch excision repair)
    Other MMR factors
     HALLA_12600
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: AHF99502
UniProt: W0JR90
LinkDB
Position
1436252..1438090
AA seq 612 aa
MEFATFTERVAAIEAEPADLEIVDHVRALLEESTADSSGDEQCGGEQIPDEQGSGEQAVD
DRGGGDRTAAELEILARFVQGRVFPAWDSTTLDIGPSSCYEAIARAAGTNVSPVNVEDRL
AELGEIGEVAASYEYGGQQGLGAFTDTAGDAGGDSLTVREVDRTLRDLAAADGDGSADRK
IDILFGLFNRCSSEEARYLARLVLSEMRIGVGEGTVRDAIAAAFDVPTDRVERALQVSND
YGRVARVAREDGRAGLDAMDLEVGRPVQAMLAQTGTVTGVLEEWSEAAVEWKYDGARVQL
HYDPDPERTGESKAEVRVFSRNMEDVTDALPEVVEFAEETLERPAILDGEVVAVDEDGSP
LPFQEVLKRFRRKHDIAKARENVTVRPVFFDCLHADGTDLLESPLTARHEQLVELLAEGD
GAAGDSPDEIRGLSLLWRTDDPEEIEAIDAEALEAGHEGIMLKDPDSTYSPGRRGKHWRK
RKPDVETLDCVVTGAEWGEGRRATFLGTFELSVRADDSDGALETVGKVATGITDETLADL
TDLLEPHIIAETGQEVDLEPEIVFEVGYEEIQSSPTYSSGYALRFPRFQGVRHDKNPSDA
DSIERLERLQGQ
NT seq 1839 nt   +upstreamnt  +downstreamnt
atggagttcgccacgttcacggagcgggtcgccgcgatcgaagccgagccagcggatctc
gaaatcgtcgaccacgtgagggcccttctcgaggagagcacggcggatagctcgggcgac
gaacagtgcggtggcgaacagattccggacgaacaggggagtggcgagcaggctgtggac
gaccgcggcggtggcgaccgaactgcagccgaactcgagatcctcgcgcggttcgtgcag
ggccgagtctttccggcgtgggattcgacgacgctcgatatcggcccgagttcgtgttac
gaggcgatcgctcgcgctgcgggaacgaacgtcagcccggtcaacgtggaggatcgactc
gcggagctgggtgaaatcggcgaggtcgccgccagttacgagtacggcggccagcagggt
ttgggggcgttcaccgacactgctggtgacgcgggcggggactcgcttaccgtccgcgag
gtcgaccgaacgctccgcgatctcgcggcggcggacggcgacggcagcgccgaccggaag
atcgacatcctcttcggcctgttcaaccgctgctcgagcgaggaagcgagatacctcgcc
aggctcgtcctctcggagatgcgaatcggcgtcggcgaaggcacggtacgggatgcgatc
gcggccgcgttcgacgtcccgaccgaccgagtcgaacgcgcgttacaggtgtcgaacgac
tacggccgggtcgctcgcgtggctcgcgaggacggacgcgctggcctcgacgcgatggac
ctcgaggttggccggccggtgcaggcgatgctcgcccagacgggcacggtgacaggcgtg
ctcgaggagtggtctgaagccgccgtcgagtggaagtacgacggcgcgcgagtccaactt
cactacgaccccgatcccgaacgaacgggagaatcgaaggccgaggtccgcgtcttctcg
aggaacatggaggacgtgaccgacgcgcttccggaggtcgttgagttcgccgaggaaacc
ctcgagcgaccggccatcctcgacggggaagtcgttgccgtcgacgaggacggctccccg
cttccctttcaggaagtgctcaaacgctttcggcggaaacacgacattgcaaaagcgcgc
gagaacgtgaccgttcgcccggtgttcttcgactgtctccacgccgacggtactgatctc
ctcgagtcgccgcttacggcccgacacgagcaactcgtcgaactacttgcggaaggcgac
ggggctgctggcgattctcccgacgagattcgaggactctccctgctctggcgaacggac
gaccccgaggaaatcgaggcgatcgacgccgaagccctcgaggccggccacgagggaatc
atgctcaaagatcccgactcgacgtactcgccgggacggcgcgggaagcactggcgaaag
cgcaaacccgacgtggagacgttagattgtgtggtgaccggtgccgagtggggcgagggt
cggcgcgcgaccttcctcggcaccttcgaactttcggtgcgtgctgacgattccgacggg
gccctcgagacggtcggcaaggtcgcgaccggtatcaccgacgagacgctagcggatctg
acagacttgctcgagccacacatcatcgctgaaacgggacaggaggtggatctcgagccc
gaaatcgtcttcgaggtcggctacgaggaaatccaatcgtcgccgacctattcgtcgggc
tacgcgctgcgctttccgcggtttcagggcgtgcgccacgacaagaacccgtcagatgcg
gactcgatcgagcgcctcgagcgactacagggccaatga

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