Haloarcula marismortui: rrnAC0463
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Entry
rrnAC0463 CDS
T00211
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
hma
Haloarcula marismortui
Pathway
hma03030
DNA replication
hma03410
Base excision repair
hma03420
Nucleotide excision repair
hma03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
rrnAC0463 (ligA)
03410 Base excision repair
rrnAC0463 (ligA)
03420 Nucleotide excision repair
rrnAC0463 (ligA)
03430 Mismatch repair
rrnAC0463 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hma03032
]
rrnAC0463 (ligA)
03400 DNA repair and recombination proteins [BR:
hma03400
]
rrnAC0463 (ligA)
Enzymes [BR:
hma01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
rrnAC0463 (ligA)
6.5.1.6 DNA ligase (ATP or NAD+)
rrnAC0463 (ligA)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
rrnAC0463 (ligA)
DNA replication proteins [BR:
hma03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
rrnAC0463 (ligA)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
rrnAC0463 (ligA)
DNA repair and recombination proteins [BR:
hma03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
rrnAC0463 (ligA)
NER (nucleotide excision repair)
Other NER factors
rrnAC0463 (ligA)
MMR (mismatch excision repair)
Other MMR factors
rrnAC0463 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AAV45492
UniProt:
Q5V4R0
LinkDB
All DBs
Position
I:complement(411392..413056)
Genome browser
AA seq
554 aa
AA seq
DB search
MEFAAFADRAEAIESESADTAITEAVTDLFRASGSDLSTLARFVQGRVFPAYESRTLDIG
PRLCYEAIARAAGQNVSADDVEQRLADLGEIGAVAASYDLGGQQGLAAFGAGGGGDDALT
VAELDDELRNLAAVDGSGSQGTKVDILFGLFSRCSSTEAGYLARLVLSEMRIGVGEGTVR
DAAAAAFDVPVEAVERAVQVSNDYGMVAEVARDEGESGLATVTLEIGRPVQAMLAQAGTV
AGALEDWDRAAVEWKYDGARVQVHFDGEDARLFSRNMEEVTDPLPEVVETVESTLDAPAI
LDGEVVAVDDGGDPLPFQEVLRRFRRKHDVAAAREDVAVRLHAFDCLHAAGEDLLDAALE
TRHDRLESLFPADSDVFSQMWLSDDAEEIESLEAEALAAGQEGIMLKDPTAAYSPGKRGK
HWRKRKPDVETLDCVVTGAEWGEGRRANVLGSFELSVRTDDGYATVGNVATGITDEELDD
LTERFEPYIRSEDGRDVVLDPAVVFEVGYEEIQASQSYASGYALRFPRFLSVREDKTPDS
ADSLARVERLAESQ
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atggagtttgccgccttcgccgaccgcgccgaagcaatagaatctgagagtgccgatacc
gcgattacggaggcggtgaccgacctgttccgagcatccggttcggacctctcgacgctt
gctcgcttcgttcaaggtcgagtgtttccggcctatgaatcccgcacgctcgacatcggg
ccgcggctgtgctacgaggcgattgctcgggcggccggccagaacgtcagtgccgacgac
gtagagcagcgcctcgcggacctgggcgaaatcggggccgtcgcggccagctacgacctc
ggtggtcagcagggcctcgccgcgttcggtgctggtggtggaggggacgacgcgctgacc
gtcgcggaactcgacgacgagctacggaacctggcggctgtcgacggcagtgggagccaa
gggacgaaagtcgatatcctctttggcctgttctcgcggtgttcgtcgacggaagccggc
tacctcgcccgcctcgtcctctcagagatgcgtatcggcgtcggcgaggggacggtccgg
gacgccgccgcggccgctttcgacgtgccggtcgaggccgtcgaacgggccgtgcaggtg
tcgaacgactacggtatggttgccgaagtggcccgcgacgagggggagtccggactggca
accgtcaccctcgaaatcggccgccccgttcaggcgatgctggcacaggcgggcacggtc
gctggcgcgctcgaagactgggaccgcgccgcggtcgagtggaagtacgacggcgctcgc
gtgcaggtccacttcgacggcgaggacgcgcggctgttctcccggaacatggaggaagtc
accgacccgctcccggaggttgtcgagaccgtggagtcgacgctggacgcaccggcaatc
ctcgacggtgaggtggtcgcggtcgacgacggcggcgacccgctcccgtttcaggaggtc
ttgcggcgctttcgccggaaacacgacgtggccgcggcacgcgaagacgtggccgtccgg
ctacacgcattcgactgtctgcacgccgccggtgaggacctgctcgacgccgcgctggaa
acgcgccacgaccgtctcgaatcactgttcccggctgacagcgacgttttctcgcagatg
tggctgtccgacgacgccgaggaaattgaaagtctggaggctgaggccctcgccgccgga
caggaggggatcatgctgaaagacccgactgcagcatactcccccggaaagcggggcaag
cactggcgcaagcgcaaacccgacgtagagacgctggattgcgtcgtcaccggcgcggag
tggggtgagggccgccgggcgaacgtgctcggctcgttcgaactttctgtccgaaccgac
gacggctacgccaccgtcgggaacgtcgcgactggcatcaccgacgaggaactggacgac
ctgaccgagcggttcgaaccgtacatccggagcgaggacggccgcgacgtagtgctcgac
ccggccgttgtcttcgaagtcggctacgaggagatacaggcttcccagtcctacgcctcg
ggctacgcgcttcggttcccccggttcctctcggtccgcgaggacaagacgcctgacagc
gctgactcgcttgcgcgcgtcgagcgactggccgagtcacagtag
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