Hyphomicrobium sp. MC1: HYPMC_2434
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Entry
HYPMC_2434 CDS
T01557
Name
(GenBank) DNA polymerase LigD, ligase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
hmc
Hyphomicrobium sp. MC1
Pathway
hmc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hmc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HYPMC_2434
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hmc03400
]
HYPMC_2434
Enzymes [BR:
hmc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HYPMC_2434
DNA repair and recombination proteins [BR:
hmc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HYPMC_2434
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
CCB65651
UniProt:
F8JHK1
LinkDB
All DBs
Position
2304107..2305177
Genome browser
AA seq
356 aa
AA seq
DB search
MRKAAPVKRPRSVPLKASALKSGRGLVSPSKIEGAVKSAMPSFVEPCLATLVAKPPIGEE
WVHEIKFDGYRIQARIDRNDVRLLTRNGLDWTDRFGGLAKALAEFHRGKAIIDGELVVED
ANGHSSFSALAAALKSGRSEKFVLHCFDLLYLDGLNLIGATLRDRKRLLEKLFVRRAKAG
PIRYSGHLAVDGARMLSDACSLGLEGIISKRIDRPYRSGRHDDWLKSKCIQVDEFVIVGY
LVSSAGPNAVGALVVGYYDKKRLIYAGRVGTGYTHRTAADLMRRLRPLHVDAPPVQGPLT
NLQRRDVVWVRPDLVAQIEYRAWTGDGLLRHAAFKGLREDKPAKDVRRPITKVIET
NT seq
1071 nt
NT seq
+upstream
nt +downstream
nt
gtgcgaaaagcagcgccggtaaaacgcccgcgatcggtcccgttgaaggcttcggcgcta
aaatccgggcgcggtctagtctctccatccaaaatcgaaggcgcggtcaagtcggccatg
ccgtcattcgttgagccttgcctggcgacgctcgtcgcgaagccgccaatcggcgaggaa
tgggtgcacgagatcaagttcgacggctatcgcattcaggcccgcatcgaccgtaacgac
gttcgcttgctgacgcgcaacgggctcgactggaccgatcgtttcggcgggcttgcaaag
gcgctcgccgaatttcatcgcggaaaagccatcatcgatggcgagcttgtcgtcgaagac
gcgaatggtcattcgagcttttcggcgctcgccgccgcgctgaaaagcgggcgcagtgaa
aagttcgttctgcactgtttcgatcttctctatctcgatggcctcaatctcatcggcgcg
acgctgcgagatcgcaaacgtctgcttgagaagctcttcgtgcgccgggcgaaggccggc
ccgatccgatacagcgggcatctcgccgttgacggcgcacgcatgctttcagatgcttgc
agtctcggcctcgaaggcatcatttcgaagcggatcgaccggccctatcgctcgggccgg
cacgacgactggctgaaatcgaaatgtattcaggtcgatgagttcgtgatcgtcggctac
ctcgtctcgagcgccgggccgaacgcggtcggcgcgctggtcgtcggctattacgacaag
aagcgattgatctatgccggacgggttggcaccgggtacacgcatcgaaccgcggccgac
ctgatgcgcaggctgaggccgcttcatgtcgatgcgcccccggtccagggaccgctgacg
aatctgcagcgcagagacgtcgtctgggtccgtcccgatcttgtggcacagatcgagtat
cgtgcctggacgggcgatgggttgctgagacacgcggcgttcaaaggcttgcgggaagat
aagcccgcaaaagacgttcgccgccctatcactaaagtgatcgagacttaa
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