Haloferax mediterranei: HFX_1625
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Entry
HFX_1625 CDS
T02129
Symbol
lig
Name
(GenBank) DNA ligase (ATP)
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
hme
Haloferax mediterranei
Pathway
hme03030
DNA replication
hme03410
Base excision repair
hme03420
Nucleotide excision repair
hme03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HFX_1625 (lig)
03410 Base excision repair
HFX_1625 (lig)
03420 Nucleotide excision repair
HFX_1625 (lig)
03430 Mismatch repair
HFX_1625 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hme03032
]
HFX_1625 (lig)
03400 DNA repair and recombination proteins [BR:
hme03400
]
HFX_1625 (lig)
Enzymes [BR:
hme01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HFX_1625 (lig)
6.5.1.6 DNA ligase (ATP or NAD+)
HFX_1625 (lig)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
HFX_1625 (lig)
DNA replication proteins [BR:
hme03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
HFX_1625 (lig)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
HFX_1625 (lig)
DNA repair and recombination proteins [BR:
hme03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
HFX_1625 (lig)
NER (nucleotide excision repair)
Other NER factors
HFX_1625 (lig)
MMR (mismatch excision repair)
Other MMR factors
HFX_1625 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AFK19331
UniProt:
I3R521
LinkDB
All DBs
Position
1546832..1548589
Genome browser
AA seq
585 aa
AA seq
DB search
MEFAEFAARAAEIEAESADLAVVSLLSDLFRDADDDLSTVARFVQGRVFPAWDSTTLDIG
PRLCHEAIARAAGPNVSADDVEDRLADRGEIGAVAASYDFGGQRGLAAFGAGGQDGLTVA
EVDSELRALAAASGSGSEETKLKTLYGLFNRTDPDEARFLARLVLSEMRIGVGEGTVRDA
IAEAFLVAPEDAAAIRDDDVDTETETAARERRDEAIATVARALQVSNDYGMVAEVTRDEG
ESGLSEVRLEVGRPVQAMLAQAGTAADALDEWETAAVETKFDGARVQVHRDEAGDVSLFS
RNMEDVTNALPEIVEFVEDAVDEPAILDGEVVAMDDDGEPLPFQEILRRFRRKHDVGRMR
EEVRVELRAFDCLHAAGDDLLTEPLTTRHDRLATVLGPDSDAVSDLLLSDCPDEVAAYES
EALEAGHEGIMLKNPDAAYSPGDRGKNWLKRKPDVETLDLVVTGAEWGEGRRAKFLGTFL
LSARVDDESGDDEFETIGKVATGITDEELVELTELLEPEIERESGKEVDIRPSVVFEVGY
EEIQASPTYSSGYALRFPRFISVREDKTAETADSLERIERLAESQ
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atggagttcgccgagttcgcagcccgcgccgccgagattgaagccgagagtgcggacctc
gccgtcgtctcgctcctttcggacctgtttcgcgacgcggacgacgacctctcgacggtc
gctcgcttcgttcaaggtcgcgtgttcccggcgtgggattcgactaccctcgatatcggc
ccccggctctgccacgaggcgattgcccgcgccgccggaccgaacgtctccgccgacgac
gtagaagaccgcctcgccgaccgcggcgaaatcggtgcagtcgccgcaagctacgatttc
ggcggccaacgcggccttgccgctttcggggctggcggccaagacggcttgaccgtcgct
gaagtcgattccgaactgcgcgcgctcgccgccgcgtcggggtcgggaagcgaagaaacg
aagctcaaaacgctctacggcctgttcaaccgaaccgaccccgacgaagcgcgcttcctc
gcgcgactcgtcctctccgagatgcgtatcggcgtcggcgagggaaccgtccgggacgca
atcgccgaagcgttcctcgtcgcacccgaagacgccgctgccatccgcgacgacgacgta
gacacggaaaccgagacggccgcccgcgaacgacgcgacgaagccatcgccaccgtggcc
cgtgcgctacaggtctcgaacgactacggcatggtcgccgaagtcacccgcgatgagggc
gaatccggtctcagcgaggtccgtctcgaagtcggacgcccggtgcaggcgatgctggcg
caagccgggactgccgccgacgcgctcgacgagtgggagactgcggcggtcgaaacgaag
ttcgacggcgctcgcgtgcaggtccaccgggacgaagcgggcgatgtgtcgctgttctcc
cggaacatggaggatgtgacgaacgcgctccccgaaatcgtggaattcgtcgaggacgcg
gtcgacgagccagccatcctcgacggcgaggtggtcgccatggacgacgacggcgagcca
ctcccgtttcaggagattctccggcgtttccgccgcaagcacgacgtgggtcggatgcgc
gaagaggtccgcgtcgaactccgggcgttcgactgcctccacgccgccggcgacgacctc
ctgacggaaccgcttacgacccgacacgaccgactggcaacggttctcgggccagactcc
gacgccgtttccgacctgctcctctccgactgccccgacgaagtcgccgcgtacgaatcc
gaggcgctcgaagccggccacgagggaatcatgctgaagaaccccgacgcggcctactca
ccgggcgaccgcgggaagaactggctgaagcgcaaacccgacgtggagaccctcgacctc
gtggtgacgggtgccgagtggggcgaaggccgccgcgcgaaattcctcggaacgttcctg
ctttcggcccgcgtcgacgacgagtccggcgacgacgaattcgagactatcggcaaggtt
gcgacgggcattaccgacgaagaactggtcgaactcacggagctactcgaacccgaaatc
gaacgcgagtcgggcaaggaagtcgatattcgcccgtcggtcgtcttcgaagtcggctac
gaggagattcaggcgtcgccgacgtactcgtcggggtacgcgcttcggttcccgcgattt
atctccgtacgggaggacaaaaccgcggaaacggccgattcgctggagcgcatagagcgg
ttggccgagtcgcaatag
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