Hydra vulgaris (swiftwater hydra): 100201725
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Entry
100201725 CDS
T01080
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) endonuclease
KO
K10771
AP endonuclease 1 [EC:
3.1.11.2
]
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
100201725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hmg03400
]
100201725
Enzymes [BR:
hmg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
100201725
DNA repair and recombination proteins [BR:
hmg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
100201725
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Motif
Other DBs
NCBI-GeneID:
100201725
NCBI-ProteinID:
XP_047128440
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Position
3:21768405..21840064
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AA seq
585 aa
AA seq
DB search
MILFKTNVETYVSYKISLLFVKNIRSFSSFQFLSKTMGKRSIDSKVDKDARKTIKNIILQ
EKDNKSTDSKVDKDAKKTMKNEILQKEDEKSTDSKVDKDAKKTTKNEILQEEDEKSTDSK
VDKDAKKTMKNEILQKEDEKSTDSKVDNDAKKTTKNDILQEEDEKSTDSKVDKDAKKTMK
NEILQKEDEKSTDSKVDNDAKKTTKNEILQEEDEKSTDSKVDKDAKKTTKNKILQDEDEK
STDSKVDKDAKKTTKNEILQEEDKKSTDSNVDKDTKKIIKNEILQEEDEKKVTDLKDEKM
ETMPSDFESKTVTADGRTSTLKICSWNVAGLRAWVNKNGLNYVIEEDPDVLCLQETKCTE
NDLPGQVLQMKNGPKVTNVSNSGYYMYWCNAKKKGCSGVSLWCKLKPLKVTYGLGIKEHD
SEGRLITAEFEKYYIITTYVPNSGQKLIRLDYRRIWNTDYKNYVGELKKKKPVIMCGDFN
VAHTEIDIANPNSNKRNAGFTEEERSDFTALLEDGYIDTFRKLNPEKTGAYTFWTYMMNA
RSKNKGWRLDYFIVTKDIEDDICDSVIRSSVMGSDHCPIVLNLAI
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atgattttatttaaaactaacgtggagacctatgttagttataaaatctctcttttgttc
gtcaaaaatattagatccttttcaagttttcagtttttatcaaaaacaatgggtaaaaga
agtatagacagtaaagttgacaaggatgcaagaaagacaataaaaaatataattctacaa
gaaaaagataataagagtacagacagtaaagttgacaaagatgcaaaaaagacaatgaaa
aatgaaattctacaaaaagaagatgaaaagagtacagacagtaaagttgacaaggatgca
aaaaagacaacaaaaaatgaaattctacaagaagaagatgaaaaaagtacagacagtaaa
gttgacaaagatgcaaaaaagacaatgaaaaatgaaattctacaaaaagaagatgaaaag
agtacagacagtaaagttgacaatgatgcaaaaaagacaacaaaaaatgatattctacaa
gaagaagatgaaaagagtacagacagtaaagttgacaaagatgcaaaaaagacaatgaaa
aatgaaattctacaaaaagaagatgaaaagagtacagacagtaaagttgacaatgatgca
aaaaagacaacaaaaaatgaaattctacaagaagaagatgaaaagagtacagacagtaaa
gttgacaaggatgcaaaaaagacaacaaaaaataaaattctacaagatgaagatgaaaag
agtacagacagtaaagttgacaaggatgcaaaaaagacaacaaaaaatgaaattctacaa
gaagaagataaaaagagtacagacagtaatgttgacaaggatacaaaaaagataataaaa
aatgaaattctacaagaagaagatgaaaagaaagttacagacttaaaagatgaaaaaatg
gaaacaatgccatctgattttgaatcgaaaactgttacagcagatggaaggacatcaact
ttgaagatttgtagttggaatgttgctggtcttagagcatgggtcaataaaaatggttta
aattatgtcattgaagaagatccagacgttttatgtttgcaagaaacaaaatgcacagaa
aatgatttaccaggacaagtgcttcaaatgaagaatggaccaaaagttactaacgtttcg
aattctggttactatatgtactggtgtaatgctaagaaaaaaggatgcagtggagtttcg
ttatggtgcaagctaaagccactaaaagtaacctatgggttaggcattaaagaacacgac
agcgaagggcgattaataacagcagaatttgaaaaatattatataataacaacctatgtg
cctaactctggtcaaaagctaataaggttagattacagaagaatatggaatacagattat
aaaaactatgtaggagagcttaaaaaaaaaaaacctgttataatgtgtggagatttcaat
gttgctcatacagaaatagatattgcgaatccaaattccaataaacgtaacgccggtttc
acggaagaagagcgtagtgatttcactgcacttttggaagatggctacatcgacacattc
agaaaacttaatccggaaaaaacaggcgcatatacattttggacttacatgatgaacgct
aggagtaaaaacaagggatggcgactagattatttcatcgtcactaaggatatagaagac
gacatatgtgacagtgtcattcgatcttcagtaatgggtagcgatcattgtcctattgtt
ctgaacttggctatttag
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