Hydra vulgaris (swiftwater hydra): 100208405
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Entry
100208405 CDS
T01080
Name
(RefSeq) DNA-directed RNA polymerase III subunit RPC1
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
100208405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hmg03021
]
100208405
Enzymes [BR:
hmg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
100208405
Transcription machinery [BR:
hmg03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
100208405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
100208405
NCBI-ProteinID:
XP_047127085
LinkDB
All DBs
Position
2:75483634..75588736
Genome browser
AA seq
1376 aa
AA seq
DB search
MVKEQYREAAVGKTIGSISFGLFSADQIQQLSTVQCVTKTLYSQDAARTPVPYGVLDKKL
GISGKDKVCDTCGKTLVDCVGHYGYIDLELPVFHIGYFRSTIVILQQICKNCSRILLNEE
DRTTYIKALRRPGLTSLQRKTLHKKIIMKCKKVTTCFYCNDRNGNVKKLGMMKILHEKYK
TTRKVDDGIITDFKNSFNEAIVYNKELDGITSKMNLVLNPLKVFHIFQNITDEDCYLLGM
VPASGRPEDLIITRVPVPPACIRPSVISELQAGSNEDDLTMKLTEMIFLNDVIRKHRSTG
AKVQIIMEDWDFLQLQCALYINGEMSGIPMNMQPKKATRGFVQRLNGKQGRFRGNLSGKR
VDFSGRTVISPDPNLRIDQVAVPIHVAKVLTFPEPVNKFNIKLMKELVKNGADIHPGANF
VISKNTGIKRYLKYGNRALVANELRYGDIVERHLMDNDVVLFNRQPSLHRLSIMAHYATV
RPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALTLMGTKSNLITPRNGEPLIA
ATQDFITGGYLITQKDIFLNRFQFCQLTSMILAGKDVNIKIDIPPPVILKPVELWTGKQV
ISVMLRPNNLSSTLVNLRTKGKNYSKDEELCVNDSYVVLHNSDLLAGTLDKNIIGSGSKD
TIFYVLLRDFGEQAAADAMWRLARITPWFLMNFGFSIGIGDVTPGQSLITAKETLLKAGY
NKCDKFIEEYNNGMLQTQPGCSPEETLEAIILRELSVIREHCGKACLQELHRSNSPLIMA
LSGSKGSFINISQMIACVGQQAISGHRTPDGFEGRSLPHFKKHSKIPAAKGFVGNSFFSG
MTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLSLQYDYTVRSSMNDVVQFT
YGEDGLDPVCMEGKDKPLDIERLFHHLRCTYPCNHEKSLNTEEILKLSENVYNESISVQK
CGSLLIQDLRDFFKKLVKNLKLSESLLLSNRKGTAHIAETHVIKTINECAKRYLHARCEP
GTAVGALCAQSIGEPGTQMTLKTFHFAGVATMNITLGVPRIKEIINASKKISTPIITAPL
EVDDDIEYARSVKGRVEKTTLGEVCEYIEEVFTPDACYLLIKIDSQRINLLKLEIDANAI
KYALCISPKLKLKPQFVSIHGKNVLTVHPIETAKSSMYYIMQNLKCQLQHVLVKGYPTVT
RAIIHLDDEKKGSKNSYKLLVEGDDLRSVMGTRGIKASECTSNNTIEVEKTLGIEAARVT
IMNEITYTMKSHGMSIDSRHVMLLADLMTFRGEVLGITRFGLAKMKESVLMLASFERTAD
HLFDASYYGKKDAINGVSECIIMGIPMNLGTGMFKLIQKHQQDVLATPRPLIFDRT
NT seq
4131 nt
NT seq
+upstream
nt +downstream
nt
atggtaaaagagcagtatagagaagcagctgttggaaaaacaataggcagcatcagtttt
ggtttgttttctgctgatcaaattcaacaattgtcaactgtgcaatgcgttaccaaaact
ctttattctcaagatgcggcaagaacacctgttccttatggtgtcctcgacaaaaaactt
ggcatcagtggaaaagacaaagtttgtgatacctgtggtaaaactcttgttgattgtgtg
ggtcactatggttatattgatttagaacttcctgtcttccacattggttattttcgttct
acaattgttattctccaacaaatttgtaaaaattgcagtcgcattttactaaatgaagaa
gatagaactacatatattaaagctttgaggcggccagggttaacaagtcttcaaagaaaa
acacttcataaaaagattattatgaaatgcaaaaaagtaacaacttgtttttattgcaat
gacagaaacggtaatgttaaaaaacttggaatgatgaagattcttcatgaaaaatacaaa
actactcgaaaagttgatgatggtattattactgatttcaaaaattcttttaatgaagca
attgtttacaacaaagagcttgacggaattacttcaaaaatgaatcttgtgttaaatcca
cttaaagtcttccatatctttcaaaatattactgatgaggattgctatttacttggaatg
gttcctgctagtggtcgtcctgaagatctgattataactagagttcctgtgcctcctgca
tgtatacgtccatctgttatttctgaacttcaagcaggcagcaatgaagatgatttaaca
atgaaactcacagaaatgatttttttaaatgatgtcattcgtaagcacagatcaacaggt
gccaaagtgcaaataattatggaagactgggacttcttgcaactgcaatgtgctttatat
ataaatggggaaatgtctggaatcccaatgaatatgcaaccaaaaaaagctactcggggt
tttgttcaaaggttaaacggtaagcagggtcgctttcgtggaaacttgtcagggaagcgt
gttgatttttcaggaagaactgtaatatcacctgatccaaacttgagaattgatcaagtt
gctgtgcctattcatgtggcaaaagttttaacttttcctgaaccagtaaataaatttaac
ataaaactaatgaaagaacttgtaaaaaatggagctgatatccatcctggagcaaacttt
gttataagcaaaaatacaggcattaaaagatatttaaaatatggtaatcgtgcattagtt
gcaaacgagttacgctacggggatattgtggaacgccatttaatggataatgatgttgta
cttttcaaccgtcaaccatctttacacagactaagcattatggctcattatgcaactgtc
cgtcctcatcgtacatttagattcaatgaatgtgtatgcacaccgtacaatgctgatttt
gatggagatgaaatgaatctgcatcttccacaaacagaggaggctaaagcagaggctctt
acgctaatggggacaaagtctaatttaataactccaagaaatggtgaaccacttatagct
gcaactcaagattttataactggcggttaccttataactcaaaaagacatttttttaaac
agatttcagttttgtcagctaacttccatgatacttgctgggaaagatgtcaacataaaa
attgatattccacctcctgttattttaaaacctgtagaattatggactggaaaacaagtt
ataagtgtcatgcttcggccaaacaatttgtcttctactcttgttaatttaagaactaaa
gggaagaattattcaaaagatgaagaattatgtgttaatgattcttatgttgttttacac
aatagtgatttgttagctggtacattagataaaaatattattggatcaggctcaaaagat
acaattttttatgttttattacgagattttggtgaacaggctgctgctgatgctatgtgg
aggcttgcaagaattacaccatggtttctaatgaactttggtttttccattggtattggt
gatgtaacaccaggtcaaagcttgattaccgccaaagaaactttgttgaaagctggttat
aacaaatgtgacaagtttattgaggaatacaataatggtatgctacagactcaacctggc
tgctcacctgaagagacacttgaggcaatcattttacgtgagttatcagtaataagagaa
cattgtggtaaagcttgtcttcaagaacttcatcgaagtaacagtcctcttattatggct
ttatctggttctaaaggttcttttataaatatctctcaaatgattgcttgtgttggccaa
caagctatctccggacatcgaacacctgatggatttgaaggaaggtcattgcctcatttt
aaaaagcattcaaagattcctgctgcaaaaggttttgttgggaatagtttcttctctggt
atgactccaacagaattttttttccatactatggctggtcgagaaggcttagtggataca
gctgttaaaactgctgaaacaggttatatgcaacgtaggcttgttaagtcattggaggac
ttatcattacagtatgactatactgtacgttcttctatgaatgatgtagttcaatttact
tatggcgaagatggtttagatccagtatgtatggaaggcaaagataaacctttagatatt
gagagattgttccatcatttaaggtgtacgtatccttgtaatcatgaaaagtcattaaac
acagaagaaatattaaaactttctgaaaatgtttataatgaatcgatcagtgtacaaaaa
tgtggttcattgttgattcaagatttaagggacttctttaaaaaattagtaaaaaatttg
aagctttcagaaagtctgttgctgtcaaatagaaaaggtacagctcatatagcagaaact
catgtaataaaaactataaatgaatgtgccaagcgatatttacatgctaggtgtgaacca
ggtactgctgttggtgcattatgtgctcagagtattggtgagccaggaacacaaatgact
ttaaaaactttccattttgctggagtagctactatgaacattacacttggtgttcctcgt
attaaggaaattattaatgcttcaaagaagataagtacccctataataacagcgcctcta
gaggttgatgatgatatagaatatgcacgcagtgtgaaaggacgagttgaaaaaacgact
ttaggagaggtttgtgagtacattgaagaagtttttactccagatgcatgctatctttta
attaagattgattctcaaagaattaatcttttaaagctagaaattgatgctaatgcaata
aagtatgcactctgtatttcaccaaaactaaagttaaaaccacaatttgtttccattcat
ggcaaaaatgttttaactgttcatccaatagaaactgccaaaagttctatgtactacatc
atgcagaatcttaaatgtcaacttcaacatgttcttgttaaaggttatccaactgtcact
cgtgcaattattcatcttgatgatgagaaaaaaggttcaaaaaatagctataaactttta
gttgagggtgatgatttgaggtcagtaatgggaacaagaggtattaaagcttccgaatgc
acatcaaataatacaattgaagttgaaaaaacattgggtattgaagctgcaagagttact
ataatgaatgagattacatacacaatgaaaagccatggaatgagtattgacagccgacat
gtaatgttacttgcagatcttatgactttcaggggtgaagttcttggtataacaaggttt
gggcttgcaaaaatgaaagaaagtgttcttatgttagcatcgtttgaaagaactgcagat
catttatttgatgcctcctattacggaaagaaagatgcaataaatggtgtaagcgaatgt
attattatgggtataccaatgaacctcggcactggcatgtttaaattaattcaaaagcat
caacaggatgttcttgctactccgagaccgcttatattcgacagaacttaa
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