Hyphomonas neptunium: HNE_2857
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Entry
HNE_2857 CDS
T00397
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hne
Hyphomonas neptunium
Pathway
hne03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hne00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HNE_2857 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hne03021
]
HNE_2857 (rpoC)
03400 DNA repair and recombination proteins [BR:
hne03400
]
HNE_2857 (rpoC)
Enzymes [BR:
hne01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HNE_2857 (rpoC)
Transcription machinery [BR:
hne03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HNE_2857 (rpoC)
DNA repair and recombination proteins [BR:
hne03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HNE_2857 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ABI76613
UniProt:
Q0BYA8
LinkDB
All DBs
Position
complement(3009131..3013339)
Genome browser
AA seq
1402 aa
AA seq
DB search
MRQDVANMFNQNAPAPSFEAIRISIASPEKIRSWSSGEIKKPETINYRTFKPERDGLFCA
RIFGPTKDYECLCGKYKRIKYRGIVCEKCGVEVTLARVRRERMGHIDLAAPVAHIWFLKS
LPSRISTLVDMPLKDVERVLYFESYVVIEPGLTELEPLQLLTEEEYMDAQDRLGEDAFTA
LIGAEAIREILKSLDLPTLAETLREELRESSSELKTKKYSKRLKVVDSFIQSKAKPEWMI
LTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRM
LQESVDALFDNGRRGRTITGTNKRPLKSISDMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PNLKLHECGLPKKMALELFKPFIYARLDAKGLAGTVKAAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
ECRVLMMSTNNILSPANGKPIIVPSQDIILGLYYLSLDRKGEIGEGMVFADLAEIEHALD
AGLVSLHSKVRALYDGVDSDGKPERRIIDTTPGRYMVANILPRSKAIGPELVNTVLSKKA
IGKIIDEVYRLCGQKATVIFCDKMMELGFREACKAGISFGKDDMVIPEAKKRLVDATKDL
VSDYERQYADGLITRGEKYNKVVDAWSSCTDKVADAMMESAAKMQVSRGKEQVNSIFMMA
DSGARGSKNQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLADT
ALKTANSGYLTRRLVDVAQDCIINEDDCGTEKGIDINAVMEGADVVVSLNERILGRVIAE
DIKGPDGKLVVPANTYVDEDVAALIDTATVDRVKVRSPLTCETKNGICAQCYGRDLARGT
LVNRGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQVADQSSLEASFEGTVRFTDAEIVTR
KDKTIVVVGRRMQVEIVDADGRTRQSFRPAYGTRLMAKDGDKVMPGKLLADWDPFAQPIV
SEVAGEARFIDLSEGTTVREETDEATGISARVVVDPRSTSKTADLKPSIQIVDASGKPVK
LPNGSPATYVLSVGAILSVSDGDRIEPGDTLSRVATGGAKTKDITGGLPRVAELFEARRP
KDHAIIAEVDGRVEYGRDYKNKRKVTIVPTEEGREPIDYLVPKGKHLAVQDGDFIKRGEY
LMDGNPAPQDILSTLGVEALANYLTDEVQKVYRLQGVPINDKHIEVIVRQMLQKVEITDG
GDTVFITGEHIDAIEFDEANEAIRKSRKKDQREATANPLLLGITKASLQTRSFISAASFQ
ETTRVLTEAAIQGKIDTLDGLKENVIVGRLIPAGTGGGIRQFRRVAAERDLKLKAKRAAA
MAKAEEGINLVSLPAPERDTAE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgcgccaggacgtcgccaacatgttcaaccagaatgcgcccgccccgagtttcgaggcg
atccgcatttcgattgcgagcccggagaaaatccgctcgtggtcgtcgggtgaaatcaag
aagcctgaaaccatcaactaccggacgttcaaaccggagcgcgacggcctattctgtgcg
cggatcttcggcccgacgaaggactatgagtgcctctgcggaaagtacaagcgcatcaag
tatcgcggcatcgtctgcgagaaatgcggcgttgaagtcacgctcgcccgcgttcgccgc
gagcggatgggtcacatcgacctggccgcgccggttgcgcacatctggttcctgaagtcg
ctgccgtcccggatctcgacgctggtcgacatgccgctcaaggatgttgagcgcgtgctt
tatttcgagagctatgtcgtcatcgagcccggcctgaccgagcttgagccactgcagctg
ctgaccgaagaagagtatatggacgcgcaggatcgcctcggcgaagacgcgttcaccgct
ctgatcggcgccgaagccatccgcgaaatcctcaagagcctcgacctgccgacgctggcc
gagacgcttcgcgaggaactgcgtgagtcgagctctgaactgaagacgaagaagtattcc
aagcgccttaaggtggtggactccttcattcagtcgaaagccaagccggaatggatgatc
ctcacggttgtcccggtcatcccgcccgacctgcgcccgctggtcccgctggatggcggc
cgctttgcgacctctgaccttaacgacctctatcgccgcgtgatcaaccggaacaaccgc
ctgaagcgcctgatggagcttcgcgcgccggacatcatcatccgcaacgagaagcggatg
cttcaggagtcggttgacgccctgttcgacaacggccgccgtggccgcacgatcaccggc
accaacaagcgcccgctgaagtcgatctccgacatgctcaagggcaagcagggccgcttc
cgccagaaccttctgggcaagcgcgtcgactattctggccgttcggtcatcgtggtcggc
ccgaacctcaagctgcacgagtgcggcctgcccaagaaaatggcgctcgagctgttcaag
ccgttcatctatgcgcgcctcgatgccaaaggcctcgccggcacggtgaaagcggccaag
aagctcgtggaaaaagaaaagcccgaagtgtgggacatcctcgatgaggtgatccgcgag
cacccggttcttctcaaccgcgcgccgacgctccaccgtctgggcatccaggcgttcgag
cccaaactgattgaaggcaaggccatccagctgcacccgctcgtctgcgctgcattcaac
gcagacttcgacggcgaccagatggcggtccacgttccactgagcctcgaggcccagctg
gaatgccgcgtgctgatgatgtcgaccaacaacatcctctcgcccgccaacggcaagcca
atcatcgttccgtcccaggacatcatcctcggtctctattacctctcgctcgaccgtaag
ggcgagatcggtgagggcatggtctttgctgaccttgccgagatcgagcatgcgctggat
gcgggcctcgtctcgctccactccaaggtccgcgcgctctatgacggcgtcgattcggac
ggcaagcctgagcgccgcatcattgatacgacgccaggccgctacatggtggcgaacatc
ctgccgcgctcgaaggcgattggacctgaactggtcaacaccgttctttccaagaaagcg
atcggcaagatcatcgacgaagtctaccgcctgtgtggtcagaaggcgacggtgatcttc
tgtgacaagatgatggagctcggcttccgcgaagcctgcaaggccggcatctccttcggc
aaggatgacatggtcatcccggaagcgaagaagcgtctggtcgacgcgaccaaggatctc
gtctccgattacgagcgtcagtatgctgacggtctgatcacgcgcggcgagaagtacaac
aaggtcgtcgatgcctggtccagctgcaccgacaaggtcgctgacgccatgatggagtcg
gctgccaagatgcaggtgtcgcgcggcaaggagcaggtcaactcgatcttcatgatggcc
gactccggggcgcgtggttcgaagaaccagatgaagcagctcgccggtatgcgcggcctc
atggccaagccatcgggcgagatcatcgagacgccgatcatctcgaacttcaaggaaggt
ctgaccgttcttgaatacttcaactcgacccacggcgcccgtaaggggctggccgatacg
gctctgaagaccgccaactccggttacctcacacgccgcctcgttgacgtggcgcaggac
tgcatcatcaacgaagatgattgcggtacggagaagggcatcgacatcaacgccgtcatg
gaaggcgccgacgttgtggtgtcgctcaatgagcgcatcctcggccgcgtcatcgccgaa
gacatcaaggggccagacggcaagctcgtcgttccggccaatacctatgtcgacgaagac
gttgcagcgctgatcgacacggcaacggtggaccgcgtgaaagtgcgttcgccgctgacc
tgcgaaaccaagaacggcatctgtgcccagtgctacggccgcgacctggctcgcggtact
ctggtcaaccgcggtgaggctgtcggcgttatcgctgctcagtcgatcggggagccgggt
acccagctcaccatgcgtaccttccacatcggcggcgccgctcaggtggcggaccaatcc
tcgctcgaagccagcttcgaaggcaccgtgcggttcaccgatgccgagatcgttacccgc
aaggacaagacgatcgtggtcgttggccgccgcatgcaggtcgaaatcgtcgatgccgac
gggcgtacccgtcagtcgttccgccccgcctacggcacgcgcctgatggccaaggacggc
gacaaggtcatgccgggcaaactgctcgctgactgggacccctttgcccagccgatcgtc
tcggaagttgccggtgaagctcgcttcatcgacctctctgaaggcacaacggtgcgggaa
gaaaccgacgaagcgaccggtatctcggcccgtgtggttgttgacccccggtcgacctcc
aaaaccgccgacctcaagccgtcgatccagatcgttgacgccagcggcaagcccgtgaag
ctgcctaacggttcgccggcgacctatgttctctccgttggcgcgatcctgtcggtctcc
gacggtgaccggatcgagccgggtgacacgctctcgcgcgtcgcaacgggcggtgccaag
acgaaagacatcacgggcggtctgccgcgcgtggctgaactcttcgaagcccggcgtccg
aaggaccatgcgatcatcgcggaagtcgatggccgcgtcgaatacggccgcgactacaag
aacaagcgcaaggtcacgatcgtgccgacagaagaggggcgtgagcccatcgactatctg
gtgccgaaagggaaacaccttgcggttcaggatggcgacttcatcaagcgcggtgagtat
ctgatggacggtaaccccgccccgcaggacatcctctcgacgctcggcgtggaagccctg
gccaactatctcacggacgaagtgcagaaggtctatcgcctgcaaggcgtgccgatcaac
gacaagcacatcgaagtgatcgttcgccagatgctgcagaaggtcgagatcaccgatggt
ggcgatacggtgttcatcaccggcgagcacatcgatgcgatcgagttcgatgaagccaac
gaggcgatccgcaagtcgcgcaagaaagaccagcgcgaagcaacggctaacccgctgctg
ctcggtatcaccaaggcctcgctccagacgcgcagcttcatctcggctgcctcgttccag
gaaacgacccgcgtgctcaccgaagcggccatccagggcaagatcgacacgctcgacggt
ctcaaggagaacgtcatcgtgggccgtctcatcccggccggtacgggcggcggtatccgc
cagttccgccgcgtggctgccgagcgcgatctgaagctcaaggcgaagcgcgcagcggcc
atggccaaggcggaggaggggatcaacctcgtcagcctcccggcccctgagcgcgacaca
gccgaataa
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integrated database retrieval system
