Halobacterium noricense: LT974_16425
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Entry
LT974_16425 CDS
T07823
Name
(GenBank) PD-(D/E)XK nuclease family protein
KO
K07464
CRISPR-associated exonuclease Cas4 [EC:
3.1.12.1
]
Organism
hno
Halobacterium noricense
Brite
KEGG Orthology (KO) [BR:
hno00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02048 Prokaryotic defense system [BR:
hno02048
]
LT974_16425
Enzymes [BR:
hno01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.12 Exodeoxyribonucleases producing 3'-phosphomonoesters
3.1.12.1 5' to 3' exodeoxyribonuclease (nucleoside 3'-phosphate-forming)
LT974_16425
Prokaryotic defense system [BR:
hno02048
]
CRISPR-Cas system
Type I CRISPR-Cas system
Subtype I-A factors
LT974_16425
Subtype I-B factors
LT974_16425
Subtype I-C factors
LT974_16425
Subtype I-D factors
LT974_16425
Type II CRISPR-Cas system
Subtype II-B factors
LT974_16425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Cas_Cas4
Zn-ribbon_8
Motif
Other DBs
NCBI-ProteinID:
UHH27227
LinkDB
All DBs
Position
unnamed1:complement(179748..180866)
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AA seq
372 aa
AA seq
DB search
MPDDQANTPTTEFLTPNRAPEADRRKRLLDAITNESFNDWYQEEQFTENILEGRPYFNGA
SPPPAAEKHSPSKLLQCHRKVRYYAENAPKEGDAPQGLFWIGSAFEEEIVVPYLLDAVTT
ENTYVRNSMWIDTTIDDGGAPVRVKGVTDPVLVDSSGDPILVMEIKTTSSVSYLDSPKPH
HKAQLHAYMYALDAEYDRSLRDGVLLYGGRDTLDIEVFHVQFDESFWQDRVVPWMRAQTQ
YRSDEVLPPADPVSDWECDTCPFRIRCGQANEGYEDVGFTGLLPGVDGYRKHQLVEYFDA
YPDAKLTPTLAHQFPALAEEHGVYDWHCPTCGATYAWDAIDIEAQSPLCERCVEDDELCT
VAVPMPESQNIH
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atgccagacgaccaagcgaatacgcccaccaccgaattcctgactccgaatcgcgcgccg
gaggccgatcgccggaagcgtctccttgacgcgattacgaacgaatcattcaacgactgg
tatcaggaagaacagttcacagagaacattctggaggggcggccgtacttcaacggcgca
tccccaccacctgccgcggagaaacattccccgagtaagttgctacagtgccatcggaag
gtccggtactacgcagagaacgcaccaaaggaaggtgatgcaccacaagggttgttctgg
attgggtctgccttcgaggaagagattgtcgtgccgtacttgctggatgcagtcacgacc
gagaacacctatgtgcggaactcgatgtggatagacacgactatcgacgacggtggcgcg
ccagtccgcgtgaagggtgtgactgacccggtgctcgtggattcctctggggacccgatt
ctcgtgatggaaatcaagacaacatcgtcggtatcgtatctggacagcccgaaaccgcat
cacaaggcacagttgcacgcgtacatgtatgcgctggatgctgagtatgaccggtcgctg
cgtgatggagtcctgctgtacggtgggcgtgacacgctagatatcgaagtgttccacgtc
cagtttgacgagtcgttctggcaggaccgcgttgttccgtggatgcgagcccaaacccag
tatcggagcgacgaggtgttaccgcctgctgatccggtgtctgactgggagtgcgacacc
tgtccgttccggattcgctgtgggcaagctaacgagggctacgaagatgtcgggttcacc
ggactgttgcccggggtggatgggtatcgaaagcaccagctcgtggagtacttcgatgcg
tatcctgacgcgaaactcacaccgacgttagcacatcaattcccggcactcgcagaggaa
cacggcgtgtacgactggcactgcccgacatgcggagcgacctacgcgtgggatgctatc
gacatcgaggcacagtcaccgctctgtgaacgctgtgtcgaagacgacgaactctgtact
gtagcggttcccatgccagaatcgcaaaacatccactaa
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