Hemiscyllium ocellatum (epaulette shark): 132806937
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Entry
132806937 CDS
T09720
Symbol
col9a1b
Name
(RefSeq) collagen, type IX, alpha 1b
KO
K08131
collagen type IX alpha
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc04510
Focal adhesion
hoc04512
ECM-receptor interaction
hoc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
132806937 (col9a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
132806937 (col9a1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
132806937 (col9a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
hoc00535
]
132806937 (col9a1b)
Proteoglycans [BR:
hoc00535
]
Extracellular matrix (ECM) proteoglycans
Others
132806937 (col9a1b)
BRITE hierarchy
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
132806937
NCBI-ProteinID:
XP_060677265
LinkDB
All DBs
Position
3:92680553..92818112
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AA seq
680 aa
AA seq
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MESSDSKWGLLYLMLFLQLMRLSFTQVSPGDSALPGPAGVPGVDGIDGDRGPDGSPGPPG
PKGDAGTRGSAGLVGPPGQDGLPGKEGSPGIPGQPGPKGEPGAVGPPGPSGEGEPGLPGP
PGPSGLPGELGRVGPPGDRGSPGLSGPPGPPGPKGLPALVHAESSDESLCPNACPPGLQG
YAGLPGMKGHKGVKGEAGEPGKQGHKGEEGEQGAPGDVGAQGPPGIQGSRGYAGMDGRKG
DMGLRGLDGEPGGIGPIGSPGDVGPQGPLGEPGPKGDLGRPGPRGITGSPGSKGEPGLPG
VDARDGIPGMPGSKGEAGKPGAPGEAGPRGFPGLPGSPGLQGAMGAKGDRGPAGLNGTMG
SPGKPGEQGPIGDLGEPGLVGPPGDRGLPGDVGPAGPPGPAGPVGDIGYPGLPGPAGLPG
AKGDRGAVGLSGGKGEQGPAGAEGIDGPKGEMGDQGNAGPKGSIGKPGEVGLRGKDGFRG
LPGVQGPRGAIGAQGLQGDRGLPGLPGRQGPPGKEPTDQHIRQVCMRVMQEHLAHLAASL
RRPETGIMGLPGRPGPPGPPGPAGENGFPGQPGPRGLTGLKGPAGITGYKGQKGEQGEKG
DRGFPGRGPRGLPGQQGLPGEPGKNSFGRDGRDGPRGLPGKSGQPGIPGPPGRAGTPGYC
ESSACTQALRAPPPENVKGP
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggagagctcggacagcaaatggggtctcttgtatctaatgctttttctacagttaatg
cggctcagtttcactcaagtttcgccaggtgattccgctctcccaggtccggccggagtc
ccgggagtggatggcattgacggagaccgaggtccagatggatccccgggtccaccgggt
cccaaaggtgacgccggtactcgaggctcggccgggttagtgggacccccgggacaagat
ggattaccaggcaaagagggatcaccaggaatccctggacaacctgggccaaagggtgaa
ccaggagcagtgggacctcctggaccttctggtgaaggtgaaccagggctacctggacct
cctggtccatctggacttccaggtgaacttggccgtgttggacctcccggtgatcgagga
tctccaggactgtctggaccaccaggcccacctggacccaagggacttccagcactggtg
catgctgaaagcagtgacgagtcactgtgtcccaatgcttgccccccagggctacagggc
tatgctggacttccaggaatgaaggggcataaaggtgtgaaaggagaggctggtgaacca
ggcaaacaaggacacaagggtgaagaaggagaacagggagctcctggagatgtaggcgct
caaggcccaccaggtattcaaggttctagaggttatgctggtatggatggacgaaagggt
gatatgggtcttcgtggattggatggcgaacctggtggcattggtcctattggttcacct
ggagatgtcggccctcaaggtcctctgggtgagccaggccctaaaggtgatcttggtcgc
cctggtcccaggggaattacagggtctccaggatcaaaaggagaaccaggattaccaggt
gttgatgcacgggatggtatacctgggatgcctggatcaaagggtgaagctggtaaacca
ggagctccaggtgaagccggacctcgaggtttccctggtttgcctggttctccaggactt
cagggtgcaatgggagcgaagggtgatcgaggtccagctggattgaatggcacaatggga
tctcctggtaaacctggtgaacagggaccaatcggtgatcttggagaaccaggtcttgtt
gggcctccaggtgaccgagggctgcctggtgatgttggtcctgcaggtccacctggccca
gctggtcccgttggtgatattggctatcctggtcttccgggtccagctggtttgccaggt
gctaaaggagatcggggtgctgtaggtttgtctggtggtaaaggtgaacaaggtcctgct
ggtgcagaaggtatcgatggtcccaagggtgaaatgggtgatcaaggaaatgctggtccc
aagggttctattggcaaacctggtgaggttggacttcgcggtaaagatggatttcgtggt
ctgccaggtgtacagggtccccgtggtgctattggagcacagggcctacaaggagatcgt
ggacttccgggcctacctgggagacagggtccacctggcaaggagccaacagaccaacac
attcgacaagtgtgcatgagagtaatgcaagaacacttagctcatttggctgccagcctg
aggagacctgaaactggtatcatgggtttgccaggacgtcctggacccccaggaccccca
ggaccagctggagaaaatggctttcctgggcaaccaggacctcgtggtcttactggccta
aaaggtccagctggtataactggttacaaaggacaaaagggtgaacaaggagagaaaggt
gatagaggatttcctggaagaggacccagggggttgccaggacagcaaggtctaccaggg
gaacccgggaaaaatagctttggtagagacggccgtgatggtcctagaggcttacctgga
aagagtggtcagcctggtatccctggtccacctggtcgtgcagggactcctggatactgt
gagtcctctgcctgcacacaagctttacgggcgccacctccagaaaatgtgaaaggacca
tga
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