Haliangium ochraceum: Hoch_0167
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Entry
Hoch_0167 CDS
T01103
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hoh
Haliangium ochraceum
Pathway
hoh03420
Nucleotide excision repair
hoh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hoh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Hoch_0167
03430 Mismatch repair
Hoch_0167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hoh03400
]
Hoch_0167
Enzymes [BR:
hoh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Hoch_0167
DNA repair and recombination proteins [BR:
hoh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Hoch_0167
MMR (mismatch excision repair)
Other MMR factors
Hoch_0167
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_11
AAA_30
Viral_helicase1
PHP_C
DUF6011
Motif
Other DBs
NCBI-ProteinID:
ACY12808
UniProt:
D0LHE6
LinkDB
All DBs
Position
247628..251113
Genome browser
AA seq
1161 aa
AA seq
DB search
MDVPTAKTSFFADLHTHSKYARATSKLSDLEHLAYWGAKKGISVVGTGDFTHPAWRGELR
DKLVPAEPGLFRLREDIEREVRARLDVPVRGLPRFLLSVEISTIYKKGDKTRKVHHLIYA
PDFDSVDRMVESLAKIGNLRADGRPILGLDSRHLLEIALSAGEGCYLVPAHVWTPWFAVL
GSKSGFDAVADCYGDLAEHIFAVETGLSSDPPMNWCLSSLDRYTLVSNSDAHSPPKLGRE
ANVFTCDMDYFAMRRALETREGFAGTVEFFPEEGKYHLDGHRKCEVVLDPAETKALEGRC
PSCGKPLTVGVMHRVQDLADRPLGYRPADAPDFRSFVPLSEIVAEIVGAGVNTKAVGRAY
ESLLARLGSELFILEHAPIEDLRRGGHGQLGSRLAEAVTRMREGRVIRQAGYDGEYGVIR
LFEARELRRPAAVSLALALPEPPAAEASAPAPEPVPASPASVASAPGTAAEFDPPPSEIP
RPSPETLRDGAASSLLSALDPEQRRAAECVHGPLLIVAGPGTGKTRTLTHRIAHLVEDIG
VEPAACLAITFTNRAAGELRERLDALLPGAGAGVAVHTFHSLALRILRENRVRAGLHRGF
RVAAESECVALLADALGCLPAKARSVLARLRRASVAASVAAGAGQGAAEQPPEASAESLD
DELARAHRVYRQALEEAARLDFDELLGRAEALLREDDIGLAYRARFRHLSIDEYQDIDAQ
QYRLIALLSGDVGAAGMRDGGQDEAGGSRSLCAIGDPDQAIYGFRGADVGFFLRFREEYP
RTREVQLTRNYRSTATIVDAALQAIAPHSLVAERVLEAADAGEGAASLPVHVVSAASARA
EAETVVHSIEALIGGTSFFSMDSGRLDDIGVGVGVGAAPGERGAAPTENDESDDLSFSDF
AVLYRTDAQSGLLCEALARSGIPFQKRSHHRLGDDPLTVALLGEMRDATAAAAAEDAESP
PPGALQAFLDAASIRLRARLETAVAAGPTPDATAAEATTSAVTGDPALDPARIAAVADLL
RPLAARCDDLDSFANELALEAEVDLWDARADRVSLLTLHAAKGLEFRVVFLVGCEDGVLP
LRWGSGRAEDLGEERRLFFVGMTRARQRLYLLHARKRRWRGELCELPVSPFVRDIEDQLL
ARGSSRPRKKPVVLHEQLGLF
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgcccacggccaagacgagcttcttcgcggacctccacactcactccaagtat
gcaagagcaaccagtaagctgagtgatctagagcatttggcttactggggagcgaagaaa
ggaatctcggtcgtgggcactggtgatttcacgcacccggcctggcggggcgagctgcgc
gacaagctggtgccggccgagccggggctgttccggctgcgcgaggacatcgagcgcgag
gtgcgcgcgcgcctggacgtgccggtgcgcggcctgccgcgcttcctgctctcggtcgag
atctcgaccatctataagaagggcgacaagacccgcaaggtccaccatctgatctacgcg
cccgacttcgacagcgtcgaccgcatggtcgagagcctggccaagatcggcaacctgcgc
gccgacggccggcccatcctcggcctcgactcgcgccatctgctcgagatcgcgctgtcc
gcgggcgagggctgctacctggtgccggcgcacgtgtggacgccgtggttcgccgtgctc
ggctccaagtcgggcttcgacgcggtcgccgactgctacggcgacctggccgagcacatc
ttcgccgtcgagaccgggctgtcctccgacccgcccatgaactggtgcctgtcgtcgctc
gaccgctacaccctggtgtccaattcggacgcgcactcgccgcccaagctcggccgcgag
gccaacgtgttcacctgcgacatggactacttcgccatgcgtcgcgcgctcgagacccgc
gagggcttcgcgggcacggtcgagttttttcccgaggagggcaaataccacctcgacggg
caccgcaagtgcgaggtcgtgctcgacccggccgagaccaaggccctcgagggccgctgc
ccgagctgcggcaagccgctaaccgtgggcgtgatgcatcgggtgcaggacctggccgac
cgaccgctgggctatcgccccgccgacgcgcccgatttccgcagcttcgtcccgttgtcc
gaaatcgtcgccgagatcgtgggcgccggggtcaacaccaaggccgtgggacgcgcgtac
gagagcctgctggcgcgactgggctcggagctgttcatcctcgagcacgcgccgatcgag
gatctgcggcgcggcggccacgggcagctcggcagccgtctggccgaggccgtgacccgc
atgcgcgagggccgcgtgatccggcaggcgggctacgacggcgagtacggcgtgatccgg
ctgttcgaggcgcgcgagctgcgccgcccggcggccgtgagcctggccctggcgctgccc
gagccgcccgcggctgaggcttccgctccggctccggagccggtcccggcgtcgcccgcg
tccgtggcttccgcgcccggtaccgctgcggagtttgatccacccccgtccgaaatcccg
cggccctcgcccgaaaccctgcgcgacggcgcggcgagttcgctgctgtctgcgctcgat
cccgagcagcgccgggcggccgagtgcgtgcacggtccgctgctgatcgtcgccgggcca
ggcacgggcaagacccgcacgctcacgcatcgcatcgcccacctggtcgaagacatcggc
gtcgagcccgccgcgtgcctggccatcactttcaccaatcgcgccgccggtgagctgcgc
gagcgcctcgacgcgctgttgccgggcgcgggcgcgggcgtcgccgtgcacaccttccac
agcctggcgctgcgcatcctgcgcgagaaccgcgtgcgcgccggtctgcatcgcggtttt
cgcgtcgccgccgagagcgagtgtgtggcgctcctggccgatgccctgggctgtttgccg
gccaaggcgcgcagcgtgctcgcccggctgcggcgcgcgagcgtggctgcgagtgtcgcg
gcgggcgcgggccagggggcggccgagcagccgccggaggcgagcgcagagtcactcgat
gacgagctggcgcgcgcgcaccgcgtctaccgccaggcgctggaggaggccgcgcgtctc
gacttcgacgagctgctgggccgcgccgaagcgctgctgcgcgaggacgacatcggcctg
gcctaccgcgcgcgttttcgccacctgtccatcgacgagtatcaggacatcgacgcccag
cagtatcggctcatcgctttgctcagcggcgacgtcggcgcggccggcatgcgcgacggt
ggccaggacgaggctggcggctcgcgcagcctgtgcgcgatcggcgaccccgaccaggcc
atctacggcttccgcggcgccgacgtcggcttcttcctgcgcttccgcgaggagtatccg
cgcacccgcgaggtccagctcacgcgcaactaccgctctacggcgaccatcgtcgacgcg
gcgctgcaggccatcgcgccgcactcgctggtcgccgagcgcgtgctcgaggccgccgat
gccggcgagggcgcggcttcgctgcccgtgcacgtggtgtccgcggccagcgcgcgcgcc
gaggccgagaccgtcgtgcacagcatcgaggccctgatcggcggcaccagcttcttctcg
atggatagcggacgcctggacgacatcggcgtcggcgtcggcgtcggcgcggcgcccggc
gagcgaggcgccgcgccgaccgagaacgacgagagcgacgacctgtcgttttcggacttc
gccgtcctgtaccgcaccgacgcccagagcgggctgctgtgcgaggcgctggcgcgctcg
ggcattccctttcagaagcgctcgcaccaccgcctgggcgacgatcccttgaccgtggcc
ctgctcggcgagatgcgcgacgcgacggccgcggccgcggccgaggacgcagagtcgcca
ccgccgggcgcgctgcaggcgtttctcgacgcggcctcgatccgcctgcgcgcgcgtctg
gagacggccgtggcagccggcccaacgcccgacgcgaccgcagccgaggcgacaacctct
gcggtgacaggcgatccggcgctcgacccggcgcgcatcgcggccgtggccgatctgctc
cggccgctggccgcgcgctgcgacgatctcgatagctttgccaacgagctggcgctggaa
gccgaggtcgatctctgggatgcgcgcgccgatcgcgtctcgctgctgaccctgcacgcg
gccaagggtctggagtttcgcgtggtgttcctggtcggctgcgaggacggcgtgttgccg
ctgcgctggggcagcggccgggccgaggacctcggcgaggagcggcggctgttcttcgtc
ggcatgacccgcgcgcgccagcgtctgtacctgctgcacgcgcgcaagcggcgctggcgc
ggcgagctgtgcgagctgccggtgtcgcccttcgtgcgcgacatcgaggatcagctcttg
gcccggggctcgtcgcggccgcgcaagaagccggtggtgctgcacgagcagctcggcctg
ttctaa
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