Haliangium ochraceum: Hoch_3330
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Entry
Hoch_3330 CDS
T01103
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
hoh
Haliangium ochraceum
Pathway
hoh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hoh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Hoch_3330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hoh03400
]
Hoch_3330
Enzymes [BR:
hoh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Hoch_3330
DNA repair and recombination proteins [BR:
hoh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Hoch_3330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
GPAT_C
Motif
Other DBs
NCBI-ProteinID:
ACY15832
UniProt:
D0LUZ1
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All DBs
Position
4605709..4608399
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AA seq
896 aa
AA seq
DB search
MSGKRHGGRGLETYRAKRDPAATPEPFGGRVGGPEWRAAAGRAAPFVVHKHAARRLHYDL
RLAMDGVLLSWAVPRGPSLSSSDRRLAVQVEDHPLDYAWFEGVIPAGEYGAGASIVWDAG
SWLPSADPRRGLEDGALEFELFGYKLRGGFRLVRTGKRGQGAGKEWLLLKRRDGFADDDA
VLVESSVLSGLTVEELGAGPTRAQQAAAALDALAAPARRLRVDQVAPMLCELADGPFSDP
DWVYELKYDGYRMLAGIADGEVSLRLRSGRDATALFPEIVRALRRWPLADAVLDGEVVAL
DEAGRPVFQRLQPRNRPAGADEIERAAALAPVSYAVFDLLACEGRDLRALPLLARKQVLA
PLVPARGPVRYADHVEAQGEAFFDQVVAHGLEGVVAKRASSSYQGRRSDEWRKIRQIRHG
RFVIVGTTSPRGGRAGFGSLHLAAWDHGWVYVGRVGTGFDARALREIAARLEALPRWRPS
FPAPSSPGRRDRWLAPTLVCEVGYQDVSDDGRLRLPRFVGLCPEVAPEDCPPPRSARALA
DARASGFATATADADADADAEDTDAVRQAAENPAGAREPAASGADQDGIDDRAPRGQVSN
PDKLYFPAGAGRRAHSKGALVAYYRAVAPWMLPYLRDRPLALVRFPEGIEGPSFFQKDAP
AWVPAWLRTETLWSPQAQRTLRYIICDSEDALAFVANLGAIAVHTWSARIGALGRPDWAI
LDLDPKGAPFVHVVEIARALRALCRALDLACFVKTSGATGLHVLIPLGGSCTHEQARTLA
QLLAQLVCAEHPAIATTARPLAARGGRVYIDCVQNGQGRLLVAPLSVRARPGAPVSMPLR
WRELSPKLDPARFTIDKAVARLRRMDPEPFAGLLDTRPDLARALALLEERLGLSRG
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atgtccgggaagcgacacggcgggcggggcctcgagacctatcgcgccaagcgcgacccc
gcggccacgccggagccgttcggcgggcgggtcggtggtcccgagtggcgcgcggcggct
ggccgagcggcgcccttcgtggtccacaagcacgcggcgcggcgtctgcactacgatctg
cgcctggccatggacggcgtgctgctgtcctgggcggtgcccagagggccctcgctgtcg
tcgtcggacaggcgtctggccgtccaggtcgaggaccatccgctcgactacgcctggttc
gagggcgtcatcccagccggggaatacggcgccggcgccagcatcgtgtgggacgcgggc
tcgtggctgccgagcgcggatccgcgccgcgggctcgaggacggcgcgctcgagttcgag
ctctttggctacaagctgcgcggcggcttccgcctggtgcgcaccggcaaacgcggccag
ggcgcgggcaaggagtggctgctgctcaagcgccgcgacggcttcgccgatgacgacgcg
gtcctggtcgagagctcggtgctgtcggggctcacggtcgaggagctgggcgccgggccg
acccgggcccagcaggccgcggccgcgctcgacgcgctcgcggcgccggcgcggcggctg
cgcgtggaccaggtggcgccgatgctgtgcgagctggccgacgggccgttctcggatccc
gactgggtgtacgaactcaaatacgacggctaccgcatgctggccggcatcgccgatggc
gaggtcagcctgcgcttgcgcagcggccgcgacgccaccgcgctgttccccgaaatcgtc
cgcgcgctgcgccgctggccgctggccgacgcggtgctcgacggcgaggtggtggccctc
gacgaggccgggcggccggtgtttcagcgcctgcagccgcgcaatcgccccgcgggcgcg
gacgagatcgagcgcgcggccgcgctggcgccggtgagctacgcggtcttcgacctgctc
gcctgcgagggccgcgatctgcgcgcgctgccgctgctggcgcgcaagcaggtgctggcg
ccgctggtgcccgcgcgcggtccggtgcgctacgccgaccacgtcgaggcccagggcgag
gcgtttttcgaccaggtggtcgcccacggcctcgagggcgtggtggccaagcgcgcgtcc
tcgagctaccagggccggcgcagcgacgagtggcgcaagatccggcagattcgccacggc
cgcttcgtcatcgtcggcaccacctcgcccaggggcgggcgcgcggggtttggctcgctg
cacctggccgcctgggaccacggctgggtgtacgtgggccgcgtgggcacgggcttcgac
gcgcgcgcgctgcgcgagatcgcggcccgactcgaggccctgccgcggtggcggccgagc
ttcccggcgccgtcgtcgcccggccggcgcgaccgctggctcgcgccgacgctggtgtgc
gaggtcggctatcaggacgtgtccgacgatggccgcctgcggctgccgcgcttcgtcggg
ctgtgccccgaggtcgcgcccgaggactgtccgccgccgcgctcggcgcgcgcgctggcc
gacgctcgcgcctccgggttcgctaccgcgaccgccgacgccgacgccgacgccgacgcc
gaggatacagacgcggtccgccaggctgccgagaacccggccggggcgcgcgagccggcc
gccagcggcgcggaccaagacggcatcgacgaccgggcgccgcgggggcaggtgagcaac
ccggacaagctctactttcccgccggcgcgggccggcgcgcgcacagcaagggcgcgttg
gtcgcctactaccgggccgtcgcgccgtggatgctgccgtacttgcgcgatcgcccgcta
gccctggtgcgcttccccgagggcatcgaggggccgtcgttcttccaaaaggacgcgccc
gcctgggtgccggcgtggctgcgcaccgagacgctgtggagcccgcaggcccagcgcacg
ctgcgctacatcatctgcgacagcgaggacgcgctggcctttgtggccaatctcggcgcc
atcgccgtgcacacctggtcggcgcgcatcggcgcgctgggccgccccgactgggccatc
ctggatctcgaccccaagggcgcgcccttcgtccacgtggtcgaaatcgcccgggcgttg
cgcgcgctgtgccgcgcgctcgacctggcgtgcttcgtcaagaccagcggcgccaccggg
ctgcacgtgctgatcccgctcggcggcagttgcacgcacgagcaagcgcgcaccctggcc
cagctcctggcccagctcgtgtgcgccgagcatcccgcgatcgcgaccacggcccggccg
ctggccgcgcgcggcggccgcgtgtacatcgactgtgtgcagaacggccagggccggctg
ctggtggcgccgctgagcgtgcgcgcgcggcccggggcgccggtgtcgatgccgctgcgc
tggcgcgagctctcgcccaagctcgaccccgcgcgcttcaccatcgacaaggccgtcgcc
cggctgcggcgcatggacccggagcccttcgccggtctgctcgacacccgacccgacctg
gcgcgcgcgctggcgctgctcgaggagcggctcgggctcagccgcggttga
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