Helicobacter pylori P12: HPP12_1163
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Entry
HPP12_1163 CDS
T00786
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K13797
DNA-directed RNA polymerase subunit beta-beta' [EC:
2.7.7.6
]
Organism
hpp
Helicobacter pylori P12
Pathway
hpp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hpp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HPP12_1163 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpp03021
]
HPP12_1163 (rpoB)
03400 DNA repair and recombination proteins [BR:
hpp03400
]
HPP12_1163 (rpoB)
Enzymes [BR:
hpp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HPP12_1163 (rpoB)
Transcription machinery [BR:
hpp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HPP12_1163 (rpoB)
DNA repair and recombination proteins [BR:
hpp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HPP12_1163 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb1_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb1_4
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
ACJ08315
UniProt:
B6JN37
LinkDB
All DBs
Position
complement(1244539..1253163)
Genome browser
AA seq
2874 aa
AA seq
DB search
MSKKIPLKNRLRADFTKTPTDLEVPNLLLLQRDSYDSFLYSKDGKESGIEKVFKSIFPIQ
DEHNRITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDI
KEQSIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSLNKLIYTGQIIP
DRGSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYL
IPFASLDANQRMEFDLKDPQGKIILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRHLA
EPVMVGKEVLLDMLTQLDKNKLEKIHDLGVQEFVIINDLALGHDASIIQSFSADSESLKL
LKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKMNHK
LGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELHSGL
VKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSEVTH
KRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVNDLGF
IEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIVLNE
KSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTGIEK
IIARDSWGAIKANRAGVVEKIDAKNIYILGEGKEEAYIDAYSLQKNLRTNQNTSFNQVPI
VKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERITKDDIFTS
THIYEKEVDARELKHGAEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMILVGKTSPK
GEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDARVLSAYE
EEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIPKEEIASIN
RFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNGVIKKVKL
YIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPSRMNIGQI
LEMHLGLVGKEFGKQIASMLEDKTRDFAKELRAKMLEIANAINEKDPLTTHALENCSDEE
LLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEKMRERVNVG
YMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEAYGAAHTLK
EMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIFGDDVDEDG
APKPIVIKEDDRPKDFSSFQLTLASPEKIHSWSYGEVKKPETINYRTLKPERDGLFCMKI
FGPTKDYECLCGKYKKPRFKDIGTCEKCGVAITHSKVRRFRMGHIELATPVAHIWYVNSL
PSRIGTLLGVKMKDLERVLYYEAYIVKEPGEAAYDNEGTKLVMKYDILNEEQYQNISRRY
EDRGFVAQMGGEAIKDLLEEIDLITLLQSLKEEVKDTNSDAKKKKLIKRLKVVESFLNSG
NRPEWMMLTVLPVLPPDLRPLVALDGGKFAVSDVNELYRRVINRNQRLKRLMELGAPEII
VRNEKRMLQEAVDVLFDNGRSTNAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSG
RSVIVVGPNLKMDECGLPKNMALELFKPHLLSKLEERGYATTLKQAKRMIEQKSNEVWEC
LQEITEGYPVLLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCSAFNADFDGDQMAVHVP
LSQEAIAECKVLMLSSMNILLPASGKAVAIPSQDMVLGLYYLSLEKSGVKGEHKLFSSVN
EIITAIDTKELDIHAKIRVLDQGNIISTSAGRMIIKSILPDFIPTDLWNRPMKKKDIGVL
VDYVHKVGGIGITATFLDNLKTLGFRYATKAGISISMEDIITPKDKQKMVEKAKIEVKKI
QQQYDQGLLTDQERYNKIIDTWTEVNDKMSKEMMSAIAQDKEGFNSIYMMADSGARGSAA
QIRQLSAMRGLMTKPDGSIIETPIISNFKEGLNVLEYFNSTHGARKGLADTALKTANAGY
LTRKLIDVSQNVKVVSDDCGTHEGIEITDIAVGSELIEPLEERIFGRVLLEDVIDPITNE
ILLYADTLIDEEGAKKVVEAGIKSITIRTPVTCKAPKGVCAKCYGLNLGEGKMSYPGEAV
GVVAAQSIGEPGTQLTLRTFHVGGTASRSQDEREIVASKEGFVRFYNLRTYTNKEGKNII
ANRRNASILVVEPKIKAPFDGELRIETVYEEVVMSVKNGEQEAKFVLRRSDIVKPSELAG
VSGKIEGKVYLPYASGHKVHKGGSIADIIQEGWNVPNRIPYASELLVKDNDPIAQDVYAK
EKGAIKYYVLEANHLERTHGIKKGDIVSEKGLFAVVADDNGREAARHYIARGSEILIDDN
SEVSANSVISKPTTNTFKTIATWDPYNTPIIADFKGKVSFVDIIAGVTVAEKEDENTGIT
SLVVNDYIPSGYKPSLFLEGANGEEVRYFLEPKTSIAISDGFSVEQAEVLAKIPKATVKS
RDITGGLPRVSELFEARKPKPKDVAILSEVDGIVSFGKPIRNKEHIIVTSKDGRSMDYFV
DKGKQILVHADEFVHAGEAMTDGVVSSHDILRISGEKELYKYIVSEVQQVYRRQGVSIAD
KHIEIIVSQMLRQVRILDSGDSKFIEGDLVSKKLFKEENARVIALKGEPAIAEPVLLGIT
RAAIGSDSIISAASFQETTKVLTEASIAMKKDFLEDLKENVVLGRMIPVGNGHV
NT seq
8625 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaaaaattcccctaaaaaaccgcttgagagctgattttacaaaaaccccgaca
gatttagaagttcctaatttattattattacaacgagacagctatgattctttcttgtat
tccaaagatggcaaagagagcgggattgaaaaggtttttaaatccattttccctatccaa
gatgagcataaccgcatcactttagaatacgcaggttgcgaatttggcaagtctaaatac
accgttagagaagcgatggagaggggcattacctactctatccccctcaaaattaaagtg
cgcttgatcttgtgggaaaaagataccaaaagtggcgaaaagaacggcattaaggacatt
aaagaacaaagcattttcattcgtgagatccctttgatgacagaacgcacttcatttatt
attaatggggtggagcgcgtggtggtcaatcaactccacagaagccccggtgtgattttc
aaagaagaagagtctagcacttctttaaacaagctcatttacacagggcaaatcatccct
gataggggttcgtggctgtattttgaatacgattctaaagatgttttatacgctcgtatc
aataaacgccgtaaagtgcctgttaccattttattcagggcgatggattatcaaaaacaa
gacatcatcaaaatgttctacccgcttgttaaagtgcgttatgaaaacgataaatatttg
atcccgtttgcttcattagacgccaatcaaagaatggaatttgacttgaaagatcctcaa
ggcaagatcattcttttagcgggcaaaaaactcacttcaagaaagattaaagagcttaaa
gaaaaccatttagaatgggtggaataccctatggatattttactcaatcgccatttagct
gagcctgttatggtggggaaagaagtcttattggacatgctcactcagctagataaaaac
aaattagaaaaaatccacgatttaggcgtgcaagaatttgtgatcatcaacgatctagcg
ttagggcatgacgcttccattatccaatctttttcagccgattctgagtctttgaaatta
ctcaagcaaaccgaaaaaattgatgatgaaaacgctctagcagcgattcgtatccataag
gttatgaaaccaggcgatcccgttacgactgaagtggctaagcagtttgtcaaaaaactt
ttctttgatccagaacgctatgatttgaccatggtaggccgtatgaaaatgaatcacaag
ttgggcttgcatgtgcctgattacattacgactttaacgcatgaagatattatcaccacc
gttaaatacctcatgaagatcaaaaacaatcagggcaagattgatgacagggatcacttg
ggcaatcgtaggatcagagccgttggggaattgttggccaatgaattgcattcaggctta
gtgaaaatgcaaaagaccattaaagacaagctcactaccatgagcggggcttttgattcg
ctcatgccccatgacttggtcaattctaaaatgatcacaagcaccatcatggaatttttc
atgggcggtcagctctcgcaatttatggatcaaactaaccccttgagtgaggttacgcac
aagcgccgcctttcagcactcggcgaaggggggttagtgaaagacagggtagggtttgaa
gccagggatgtgcaccccacgcattatggccgaatctgtcccattgagaccccagaaggt
caaaatatcggtctgatcaacaccctttccactttcacgagggtgaatgatttaggcttt
attgaagccccttataaaaaggttgtggatggcaaggtcgtgggtgagacgatttatctg
accgctattcaagaagacagccacatcatcgctcctgcaagcacccccattgatgaagag
ggtaatattttaggcgatttgattgaaacgcgcgtggaaggcgagattgttttaaacgaa
aaaagcaaagttaccttaatggatttaagctctagcatgctagtaggggtcgccgcatcg
ctcattcctttcttagagcatgatgacgccaaccgcgctttaatggggactaacatgcag
cgccaagccgtgccgttattaagaagcgacgctcccattgtaggcacagggattgaaaaa
attatcgctagggattcttggggagcgatcaaggctaatcgtgcaggcgttgtagaaaaa
attgatgctaaaaacatttatattttaggcgaaggcaaagaagaagcctatattgatgcg
tattctttgcaaaaaaacttgcgcaccaaccaaaacaccagtttcaatcaagtccctatc
gttaaagtgggcgataaagtggaggccgggcaaatcatcgctgatggccctagcatggat
agaggcgagttagcgttagggaaaaatgtgcgcgtggcgttcatgccttggaatggctat
aactttgaagacgccatcgtggtgagtgagcgcatcactaaagatgatattttcacttcc
acccacatttatgaaaaagaagtggacgctagggagcttaagcatggcgcggaagaattt
accgctgatattcctgatgtgaaagaagaagcgctcgctcatcttgatgaaagcgggatc
gttaaagtgggcacttacgtgagcgctggcatgattttagtgggcaagacttctcctaaa
ggcgagattaaaagcacgcctgaagagcggcttttaagggccatttttggggataaagcc
gggcatgtggtcaataagagtttgtattgcccccccagtttggaaggcacggtgattgat
gtgaaagtcttcactaaaaaaggctatgagaaggatgcacgggttttgagcgcgtatgaa
gaagaaaaagccaagcttgatatggagcattttgaccgcttgaccatgctcaatagagaa
gaattgttgcgcgttagttcgctcctttctcaagcgattttagaagagcctttcagccat
aacggcaaggattataaagaaggcgatcaaatccctaaagaagaaatcgcttcaatcaac
cgcttcactttggctagtttagtcaaaaagtattctaaagaagtgcaaaaccactatgaa
atcactaaaaataatttcttagagcaaaagaaagttttgggtgaagagcatgaagaaaag
ctctctattttagaaaaagatgatattttgcctaatggcgtgatcaaaaaagtcaagctc
tatatcgctacaaaacgaaagcttaaagtgggcgataaaatggcaggaaggcatgggaat
aaagggattgtgtctaatatcgtgccggttgcagatatgccttataccgctgatggcgag
cctgtagatattgtcttaaaccctttaggcgtgccaagccgcatgaatatcggacagatt
ttagaaatgcatttaggcttagtggggaaagagtttgggaaacaaatcgctagcatgcta
gaggataaaaccagagattttgccaaagaattgcgcgctaaaatgctagaaatcgctaac
gccattaatgaaaaagaccccttgacaacccatgcgcttgagaattgctctgatgaagag
cttttggaatacgctaaagattggagcaagggcgttaagatggctatccctgtgtttgaa
ggcatctcgcaagaaaaattttacaagctgtttgaattagccaagatcgctatggatggc
aaaatggatctgtatgatgggcgcacaggcgagaaaatgagggagcgcgtgaatgtgggc
tacatgtatatgatcaaactccaccatttagtggatgaaaaagtccatgccagaagcaca
ggtccttatagcttggtaacgcaccagcctgttgggggtaaagcgctctttgggggtcaa
aggtttggggaaatggaagtgtgggccttggaagcttatggcgcagcacacactctaaaa
gaaatgcttaccattaaatccgatgatattagaggcagagagaacgcttatagggctatc
gctaaaggtgagcaagtgggcgagagcgaaatccctgagactttctatgttttgactaaa
gaattgcaatcgctcgctttggatattaatatttttggggacgatgtggatgaggatgga
gcgcctaaacccattgtcattaaagaagatgacaggcctaaagactttagctctttccag
ctcactctagccagccctgaaaaaatccattcttggagttatggggaagttaaaaagcca
gaaacgatcaattatcgcaccttaaaacctgaacgagacggcttgttttgcatgaaaatc
tttggccctactaaagattatgaatgcttgtgcggtaaatacaaaaagcctcgcttcaaa
gacattggcacatgcgaaaaatgcggcgtggcgatcacgcactccaaagtcaggcgtttt
agaatggggcatattgaattggccactcctgtagcgcacatctggtatgtcaattcctta
cctagccgtatcggcacgcttttaggcgttaagatgaaagatttagagcgcgtgttgtat
tatgaagcttatatcgttaaagagccaggcgaagccgcttatgacaatgaaggcactaag
cttgtgatgaaatacgatattttgaatgaagagcagtatcaaaatatctcacgaagatac
gaagacaggggatttgtggcgcaaatgggcggcgaagcgatcaaggatttgttagaagaa
attgatttgatcaccttattgcagagtttgaaagaagaagtgaaagacaccaattctgat
gcgaaaaagaaaaaactcattaagcgtttgaaagtggtagaaagctttttaaattctggt
aacaggcctgagtggatgatgctcacggttttaccggtattgccaccggatttaaggcct
ttagtcgcgctagatggcgggaagtttgcggtcagcgatgtgaatgaattgtatcgtcgt
gttatcaatcgtaaccaacgcttgaaacgcctaatggagcttggggcgccagaaatcatt
gtgcgcaacgaaaaaaggatgttgcaagaagccgtggatgtgctttttgataacggccgc
agcactaatgcggttaaaggggctaacaagcgccctttaaaatcgctcagtgagatcatt
aaaggcaagcaagggcgtttcaggcaaaaccttttaggtaagcgcgtggatttttcaggc
agaagcgtgattgtggtggggcctaatctcaaaatggatgaatgcgggttgcctaaaaac
atggcgttagaactcttcaaaccgcatttgttatccaagcttgaagagaggggctatgcc
accacgctcaaacaagctaaacgcatgattgagcaaaaaagcaatgaagtgtgggagtgc
ttgcaagaaatcacagaggggtatccggtgttactcaaccgcgctcctaccttgcacaag
caatccattcaagcgttccatccaaagctgattgatggcaaagcgatccaattgcacccg
ttagtgtgttcagcgttcaatgccgattttgacggggaccaaatggcagtgcatgtgcct
ttaagccaggaagcgatcgctgaatgcaaggtgcttatgctaagctctatgaatatcctt
ttacccgctagcggtaaagccgtagccattcctagccaagatatggttttagggctttat
tatctttctttagaaaagagtggggtcaagggcgaacataagcttttttctagcgtgaat
gaaatcatcaccgctattgacacgaaagaattagacatccacgcaaagattagggtttta
gatcaagggaatattatctctacgagcgcagggcgcatgatcattaaatctattttgcct
gattttatccctacggatttgtggaacagacccatgaagaaaaaagatattggcgtgctt
gtggattatgtgcataaagtcggcggtatcggtattactgcaacctttttggataattta
aaaacgcttggctttaggtatgcgactaaggctggtatttctatctctatggaagatatt
atcacgccaaaagacaagcaaaaaatggtggaaaaagccaaaatagaggttaaaaaaatc
cagcaacaatacgatcaagggttgctcactgaccaagagcgttacaataagatcattgac
acttggactgaagtcaatgacaaaatgagtaaagaaatgatgagcgctatcgcgcaagat
aaagagggctttaactctatttatatgatggcagatagcggcgcaagggggagcgcggcg
caaatccgtcagctttcagcgatgaggggccttatgacaaagccggacggcagtatcatt
gaaacgcccattatctctaactttaaagaggggttgaatgtcttagaatactttaactcc
acgcatggcgctagaaagggcttggcggatacagcgctaaaaacagccaatgcggggtat
ttgacaagaaagctcattgacgtttcgcaaaatgtcaaggtggtgtctgatgattgcggc
acgcatgaagggattgaaatcacggatattgcggtggggagtgagctgattgaaccttta
gaagagcgtatttttgggcgcgttttattagaagatgtgatcgatcccattacgaatgaa
atcttgctttatgcggacactttgattgatgaagagggcgctaaaaaggtggttgaagcc
gggattaaatccattacgatccgcaccccagtaacttgtaaagcgccaaagggcgtgtgc
gcgaaatgctatggcttgaatttgggcgaaggcaagatgagttatccgggtgaagcggtg
ggcgtggtagccgcgcaatctatcggggagcctggaacgcagctcactttaaggactttc
catgtgggcgggacagcgagcaggagtcaggatgagcgtgaaatcgtggcgagcaaagaa
ggttttgtgcgtttttataaccttaggacttacacgaataaagagggtaaaaacattatc
gctaaccgccgtaacgcttctattttagtggtagagcctaagattaaagcgccttttgat
ggggaattacgcattgaaacggtctatgaagaagtcgttatgagcgtgaaaaatggcgag
caagaagctaagttcgttttaagaagaagcgatattgtcaagccaagcgaattagccggc
gttagcggtaagattgaggggaaagtgtatttgccttatgctagcgggcataaggtgcat
aagggaggaagtatcgctgatattatccaagagggctggaatgtgcctaatcgcatccct
tatgcgagcgaattgctagtcaaggataatgaccctattgcgcaagatgtgtatgccaaa
gaaaaaggtgcaatcaaatattatgttttagaggctaaccatttggagcgcacccatggg
atcaagaaaggcgatattgtgagcgaaaaaggcttgtttgcggtggtagctgatgataat
ggtagggaagccgctcgccattatatcgctaggggttctgagatcttgattgatgataat
agtgaagtgagcgctaatagcgtgatctctaaacccacgactaacacttttaaaacgatt
gccacatgggatccttacaacacccctatcattgcggactttaagggtaaggtgagtttt
gtggatattatcgcaggggttacggtcgctgaaaaagaagacgaaaataccggtatcacc
agtttagtggtgaatgattacattccaagcggatacaaaccaagcttgtttttagagggg
gctaatggcgaagaggtgcgttatttcctagagccaaaaacttctatcgccattagcgat
ggctttagcgtggagcaggctgaagtgttagcgaaaatccctaaagcgaccgttaaatcc
agggatattactgggggtctcccaagggtttctgaactctttgaagcgagaaaacccaag
cctaaagatgtggcgatcctttctgaagtggatgggatagtgagttttggcaaacctatt
cgcaataaagaacacatcatcgtaacttctaaagatggccgttccatggattattttgtg
gataaaggcaagcaaattctagtgcatgccgatgaatttgtgcatgcgggagaagcgatg
acggacggagtggtttcaagccatgatattttaaggatcagtggcgaaaaagagctttat
aaatacattgtgagcgaagtccagcaagtgtatcgcaggcagggggtgagcattgccgac
aagcacattgaaatcattgtctctcaaatgctaaggcaagtgcgcattttagacagcggg
gatagcaagtttattgaaggggatttagtcagtaaaaaactcttcaaagaagaaaacgct
cgtgtgatcgctttaaaaggcgagccagcgattgctgaaccggtgcttttagggatcacc
agagcggctatcgggagcgatagcatcatttcagcggcctctttccaagaaacgactaaa
gttttaacagaagccagtatcgctatgaaaaaagactttttagaggatttgaaagagaat
gtggtgttggggaggatgatccctgtgggaaacgggcatgtataa
DBGET
integrated database retrieval system
