Hydrogenophaga pseudoflava: HPF_22245
Help
Entry
HPF_22245 CDS
T06073
Symbol
dacB
Name
(GenBank) D-alanyl-D-alanine carboxypeptidase DacB precursor
KO
K07259
serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:
3.4.16.4
3.4.21.-]
Organism
hpse
Hydrogenophaga pseudoflava
Pathway
hpse00550
Peptidoglycan biosynthesis
hpse01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
hpse00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
HPF_22245 (dacB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
hpse01002
]
HPF_22245 (dacB)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
hpse01011
]
HPF_22245 (dacB)
Enzymes [BR:
hpse01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
HPF_22245 (dacB)
Peptidases and inhibitors [BR:
hpse01002
]
Serine peptidases
Family S13: D-Ala-D-Ala peptidase C family
HPF_22245 (dacB)
Peptidoglycan biosynthesis and degradation proteins [BR:
hpse01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
HPF_22245 (dacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S13
Motif
Other DBs
NCBI-ProteinID:
QBM30424
UniProt:
A0A4P6X9H6
LinkDB
All DBs
Position
4654349..4655977
Genome browser
AA seq
542 aa
AA seq
DB search
MRHPLHTALLTGLLLTLVSGGALAQAQEQELSADELRLTPEAGLHAPGAPSATAPAALPA
AGPRAAAPQPPVQTGLPPSVLAALQRAQVPAAAMSALVLPVGGPGAARVRFNTEQPVNPA
SVMKLVTTYAAMDLLGPDFTWSTRFYTDGVVDKGTLRGNLYIKGGGDPKLVLERIQGAFQ
ALQNLGVVVVLGDMVLDNSAFDLPPRDPGAFDGEALRPYNAGPDALLVNFKSVVLKFFPD
PAAGVARVVSEPPMAGLAVDATLPLARGGGCGDWRGAIGARFDDVNAIRFTGRYPVGCGD
KEWPVAYQDPASYAARALEGLWRNSGGALTGKVVMGPTPSRARLLHEARSLPLSEIIADV
NQWSNNVMAQQLFLTLGQLAPARVDSMTVPRGRLTPERQGRLERSREIVARWWRTTFGIR
HTVPVMENGSGLSRIERITPEALGDLLLHAARHPRGATFVQSLSVAGVKGTAARVGREPG
SPAYGNAWLKTGTLRDVTGIAGYVNAGNGGRYVVVGFINHPNAMAARPALDTLVEWTAAL
PD
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgcgacaccccctgcacaccgccctgctgaccggcctgctgctgaccctggtcagcggc
ggtgcgctcgcacaggcgcaggaacaggagctgtcggccgacgagttgcggctcaccccg
gaggcgggcctgcatgcccccggcgcaccatccgccaccgctcctgcggccttgccagcc
gccggtccgcgcgccgcggcaccccagccccccgtgcagaccggcctgccaccgtcggtg
ctggcggccctgcagcgcgcccaggtgcccgcggcggccatgtcggccctggtgctgccg
gtcggtggccccggtgccgcccgggtgcgcttcaacaccgaacagccggtcaacccggcc
tcggtgatgaagctggtgaccacctacgccgcgatggacctgctcggccccgatttcacc
tggtcgacccgcttctacaccgacggcgtggtggacaaaggcacgctgcgcggcaacctc
tacatcaagggcggcggcgaccccaagctggtgctcgaacgcatccagggcgccttccag
gcgctgcagaacctgggggtggtggtcgtgctgggcgacatggtgctggacaacagcgcc
ttcgacctgccgccgcgcgaccccggcgccttcgacggcgaggcgctgcggccctacaac
gccggccccgacgcgctgctggtgaacttcaagtcggtggtgctcaagttctttcccgac
ccggccgctggcgtggcgcgcgtggtcagcgagccgccgatggccggtctggcggtggac
gccacgctgccgctggcgcgcggtggcggctgcggcgactggcgcggcgccatcggcgcc
cgtttcgacgatgtcaacgcgatccgcttcaccggccgctacccggtgggctgcggcgac
aaggagtggccggtggcctaccaggacccggccagctacgcggcgcgcgccctcgaaggg
ctgtggcgcaacagcggcggcgcgctcaccggcaaggtggtcatgggccccaccccgtcc
cgcgcccgcctgctgcacgaggcccggtcgctgccgctgtcggagatcattgcggacgtc
aaccagtggagcaacaacgtgatggcgcagcagctgttcctcacgctggggcagctggcg
cccgcgcgggtggattcgatgaccgtgccgcgcggccggctcacgcccgaacgccagggc
cggctggagcgttcgcgcgagatcgtcgcgcgctggtggagaaccaccttcggcatccgc
cacaccgtgccggtgatggaaaacggctcgggcctctcgcgcatcgagcgcatcacgccc
gaggccctgggcgatctgctgctgcacgcggcccgccacccccgcggcgcgaccttcgtc
cagtcgctgtcggtggccggggtcaagggcacggcggcccgcgtcggccgggagccgggc
agcccggcctatggcaacgcctggctcaagaccggcacgctgcgcgacgtgaccggcatc
gccggctatgtgaacgcgggcaacggtggtcgttacgtggtggtcgggttcatcaaccac
ccgaacgccatggcggcacgcccggcgctcgacaccctggtcgagtggaccgccgccctg
cccgactga
DBGET
integrated database retrieval system
