Helicobacter pylori 52: HPKB_1327
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Entry
HPKB_1327 CDS
T01898
Name
(GenBank) metal-dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
hpz
Helicobacter pylori 52
Pathway
hpz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPKB_1327
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpz03019
]
HPKB_1327
Messenger RNA biogenesis [BR:
hpz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HPKB_1327
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B
RMMBL
RNase_J_C
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
ACX99868
LinkDB
All DBs
Position
complement(1377897..1379999)
Genome browser
AA seq
700 aa
AA seq
DB search
MKGIIIMTDNNHYENNENNENSSENPKAHHEARAGAFERFTNRKKRFRENAQKNAESSNH
EVLLHHKKERHPNKKPNHHHKAKHTPQKTRNYAQEELDNNKVEGVTEILHVNERGTLGFH
KELKKGVEANNKIQVEHLNPHYKMNLNSKASVKITPLGGLGEIGGNMMVIETPKSAIVID
AGMSFPKEGLFGVDILIPDFSYLHQIKDKIAGIIITHAHEDHIGATPYLFKELQFPLYGT
PLSLGLIGSKFDEHGLKKYRSYFKIIEKRCPISVGEFIIEWIHITHSIIDSSALAIQTKA
GTIIHTGDFKIDHTPVDNLPTDLYRLAHYGEKGVMLLLSDSTNSHKSGTTPSESTIAPAF
DTLFKEAQGRVIMSTFSSNIHRVYQAIQYGIKYNRKIAVIGRSMEKNLDIARELGYIHLP
YQSFIEANEVAKYPDNEVLIVTTGSQGETMSALYRMATDEHRHISIKPNDLVIISAKAIP
GNEASVSAVLNFLIKKEAKVAYQEFDNIHVSGHAAQEEQKLMLRLIKPKFFLPVHGEYNH
VARHKQTAISCGVPEKNIYLMEDGDQVEVGPAFIKKVGTIKSGKSYVDNQSNLSIDTSIV
QQREEVASAGVFAATIFVNKNKQALLESSQFSSLGLVGFKDEKHLIKEIQGGLELLLKSS
NAEILNNPKKLEDHTRNFIRKALFKKFRKYPAIICHVHAT
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaggaataattattatgactgataacaaccattatgaaaataatgaaaacaatgaa
aacagcagtgaaaacccaaaagctcatcatgaggcgcgagccggagcgtttgagcgattc
accaaccgcaaaaagcgttttagagaaaacgcgcaaaaaaacgcagagtcttcaaaccat
gaagtgcttttgcaccataaaaaagagcgccaccccaacaaaaaaccaaaccaccaccac
aaagctaaacacaccccccaaaagactagaaattacgcccaagaagaattggataacaac
aaagtagagggcgttacggaaattttgcatgtgaatgagagggggactttaggctttcat
aaggagctaaaaaagggcgttgaagctaacaataagatccaagtggagcatttaaaccca
cactataagatgaatctaaattctaaagcgagcgttaaaatcacgcctttagggggcttg
ggcgagattggggggaacatgatggtcattgaaaccccaaaaagcgcgatcgtgattgat
gcaggcatgagcttccctaaagaggggctatttggcgtggatattttaatcccggatttt
tcctacttgcaccaaatcaaggacaaaatcgctggcattatcatcacccatgctcatgaa
gatcacataggggccacgccttatttgtttaaagagttgcaattccccctttatggcacg
cccttgagtttggggttgattgggagcaagtttgatgaacatggtttgaaaaaataccgc
tcgtattttaaaatcatagaaaagcgctgccccattagcgtgggcgaatttattattgaa
tggatccacatcacgcattccattattgacagcagcgctttagcgatccaaactaaagcc
ggaaccatcatccacaccggcgattttaaaatcgatcacaccccagtggataatctgccc
actgatttgtatcgtttggcgcactatggcgaaaagggggtgatgcttcttttaagcgat
tccactaactcccataaatccgggacgacaccgagtgaaagcaccatagcgccggctttt
gatacgctttttaaagaagcgcaagggagggtgattatgagcacattctctagcaatatc
caccgggtgtatcaagccatacaatacggcattaaatacaaccgcaagatcgctgtgatc
gggcgctctatggaaaaaaacctagacatcgccagagaattaggctatatccatttgcct
tatcaatcttttattgaggccaatgaagtcgctaaatacccggataatgaagtcttaatc
gtaacgaccggctcgcaaggcgaaaccatgagcgcgctttatcgcatggcaactgatgaa
caccgccacatttctatcaaacccaacgatttagtcatcatctctgctaaagccattcct
ggcaatgaagcgagcgtttcagcggtattgaattttttaatcaaaaaagaagctaaagtg
gcttatcaagaatttgacaatatccatgtgagcgggcatgccgcccaagaagagcaaaag
ctcatgttaagactcattaagcctaagtttttcttacccgtgcatggggaatataaccat
gtcgcgcgccacaagcaaaccgctatttcttgcggggtgcctgaaaaaaatatctattta
atggaagatggcgatcaagtggaagttggccctgcgttcattaaaaaagtaggcacgatt
aaaagcgggaaaagctatgtggataaccaaagcaatttgagtattgatacaagcattgtg
caacaaagagaagaagtcgctagcgctggggtgtttgccgctacgatttttgtgaataaa
aacaaacaagcgcttttagaaagctctcaattttctagtttagggcttgtgggctttaaa
gatgaaaagcatttgattaaagaaattcaagggggattagagttgttattgaaatccagc
aacgccgaaattttgaataaccctaagaaattagaagatcacacccgtaatttcatcaga
aaagcgctctttaaaaagtttagaaaatacccggctatcatttgccatgtccatgccact
tga
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