Haliotis rubra (blacklip abalone): 124266222
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Entry
124266222 CDS
T07967
Name
(RefSeq) DNA repair protein RAD50-like isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
hrj
Haliotis rubra (blacklip abalone)
Pathway
hrj03440
Homologous recombination
hrj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hrj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
124266222
03450 Non-homologous end-joining
124266222
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hrj03032
]
124266222
03400 DNA repair and recombination proteins [BR:
hrj03400
]
124266222
DNA replication proteins [BR:
hrj03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
124266222
DNA repair and recombination proteins [BR:
hrj03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
124266222
BRCA1-C complex
124266222
NHEJ (non-homologous end-joining)
MRX complex
124266222
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
AAA_15
SbcC_Walker_B
SMC_N
AAA_13
OmpH
AAA_29
ABC_tran
RNA_helicase
AAA_16
Motif
Other DBs
NCBI-GeneID:
124266222
NCBI-ProteinID:
XP_046556988
LinkDB
All DBs
Position
Unknown
AA seq
1312 aa
AA seq
DB search
MSTIEKMSIQGVRSFGPDDSNKQVITFFKPLTLILGPNGTGKTTVIECLKYMTTGDMPPG
SKGGAFIHDPKVAHEREVKGQIRLLMRDMTGQQCSVQRSITATQKVKKIETRTLDGVITR
WGPDGQKKSITSRCAELDKEMVTALGVSKAVLDNVIFCHQEESNWPLCEGRALKEKFDAI
FASTRYTKVLDTIRKLKQEQDGHIKLYKQDLKYLKEHKDKATELQSNLEELNIKSVASKE
SVAKITEQLVPIEERLDKIQQNANEIFKVKTKIEKLESEKGQLEKNIQELQDNIEHEFQG
PTEELKRVMEDFEDKLQERKDTVQQMERRKEELSTSADKLGREKSQLQLEVGKLQQEAQT
HKQNIEKRDELIRTLAVQYVFEGFERGQISDEKYKSFFENVRTKLEGMVADTRDLKTRYE
DKEASVQKKMDDLRDSKTKLEQSERIKKDLMTKNLIEIRQINQKLSHMEASAGRLDQLTR
DLKGAELDLSSTEGTVNLEDLKREITLLDKDRRQLDTTLSDLNSEINRLTRELETQTQLD
GMKKDKTSKEDLIRRLKAKHEDGLTYLLGLMPTTNIRGQLEDFIGQQTEQVKQCSAELQK
ARTDLSSKEAEKNMLGNQIKDAEKKLTGLEERIFDVCGSQDFDDGLRSVQTKMAQTQDKR
GSLRGAEHFFKKYQEDLEKDSPCCPLCHREFSTDQEVRELILELQDKLRLVPTHLRKAEK
DLDDFQHKYDNMTQLKPLRENIVTLRDTEIPQLKNKQRRLNEEIQKLRDLVQNKEDELQA
KETDEVTGKGMQPDIVMMDRYYGEIRELDKKIATQSSMLSGGDSGRTLETVIGEKEDKQM
QLDTINRRLDHKRQKLSDHSEHVQKLRSKMNSLKEEKLKIDSELQQQTKLEETKTSRITD
NKLHEQDIQEAKTQIGPLEEQIERQRQEKMKLVATKEDKLDGAKAEIDCVKSEAKQVKDV
NGEIKLYNQSMKADRLEERQERMSTITTKETSVNQEREEITENVNKLSKDLATQQIRERE
LMDNLQLRQKQKEVGRLEREIGVLQDQMGDFDTANLERERRKLLQKADEMQKERNICKGR
QEGLDNMIRNTKKELQTDMFKDAGSKYRDMMIQMRTTELANSDLEKYYRAMDKAIMNYHV
QKMDEINKIIRELWRNTYRGNDIETIEIRSDDEDGAALKSRRIYHYRVVMIKGDTALDMR
GRCSAGQKVLASLIIRLALAETFCVNCGILALDEPTTNLDRENIESLAYALVSIIKARSC
QKNFQLVVITHDEDFVELLGRSDYVDDFYQMSKDQSGYSCITKSKVQNLHRG
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaccatagagaaaatgagcattcagggggtgcgtagctttggtccagatgattcc
aacaagcaggtcatcacattcttcaagcccctgacactcattctcggaccaaatggtaca
gggaaaacgactgttatcgaatgtctcaagtatatgacaacaggcgacatgccacctgga
agcaaggggggagctttcatccatgaccccaaggtcgcccatgagcgtgaagtgaagggc
cagattcgtctcctgatgagggacatgacgggtcaacagtgtagtgtacagaggtccata
acagcaacacagaaggtgaaaaagatagagactagaacactagatggtgtgattacaaga
tggggaccggatggacagaagaagagcatcacttctaggtgtgctgaactagacaaggag
atggtgactgcactgggagtgtccaaggctgttctggacaacgtgattttctgtcaccaa
gaggagtccaactggccgctgtgtgaggggagagccctgaaggagaagtttgatgccatc
tttgcctcgaccagatacaccaaggtgctggataccatccggaaactcaagcaagagcag
gacggccacatcaagctctacaaacaggacctgaagtacctaaaggagcataaggacaag
gcgactgagctgcaatccaacctggaggaactcaacatcaagtctgtagcttccaaggag
tctgtagcaaagattactgagcagcttgttcctatagaggagcgtcttgataaaatacaa
cagaatgcaaatgagatattcaaagtgaagactaaaattgagaagctggagagtgagaag
ggccaactggagaaaaatatccaggaactccaggacaacattgaacatgaatttcaaggg
cccacagaggaactgaagcgagtcatggaggactttgaggacaagcttcaggagaggaag
gacacagtgcagcagatggagcgacggaaggaggagctgtcaacatcggcggataaactt
ggccgagagaagtcacagctgcagctggaggtgggcaagctgcagcaggaggctcagact
cacaaacagaatattgagaagcgggatgagctgatccgtaccctggctgtccagtatgtg
tttgaagggtttgagagagggcaaatctccgacgagaaatataagtcgttctttgaaaat
gtcagaaccaaactggagggaatggttgccgacactcgggacttgaagacgaggtatgaa
gataaggaggcctccgttcagaagaagatggatgacctgcgggacagcaagaccaagctg
gagcagagtgagcggatcaagaaagacctcatgaccaagaacttgattgagatccgacag
attaaccagaagttgagccacatggaggcatctgccgggagacttgaccaactgaccaga
gacctgaagggagcggagctggacctgagcagcacagaagggacggtcaacttggaggat
ctgaagagggagataactctcctcgacaaagacagacggcagctggacacaactctcagt
gatctgaactcagagataaatcgcctgacccgagagctggagacccagactcagcttgat
gggatgaagaaggataagacttctaaagaggacctcatccgccgactgaaagcaaaacac
gaggacggcctgacctacctcctgggactcatgccgacaaccaacatccggggacaactt
gaggactttataggacagcagacggagcaagtgaagcagtgttctgctgagctccagaag
gccaggactgacctctcctccaaggaggccgaaaagaacatgctgggaaatcagatcaag
gatgctgaaaaaaagctgacaggacttgaagagaggatatttgatgtgtgtggcagccag
gacttcgacgatggactcaggtccgtgcagaccaagatggctcagacgcaggataaacgt
ggttcacttcgcggcgcagaacatttcttcaagaagtatcaggaagatctggagaaagac
agtccctgttgtcccctgtgtcaccgagagttttccactgatcaggaggtccgggaactg
atcctagagctccaagacaagctccggcttgtgccaacccacctgaggaaggcagagaaa
gacctggatgacttccagcacaagtacgacaacatgacgcaactcaagcctctcagggaa
aacatcgtgaccctgagggacacagagattccacaactgaagaacaaacagcggcgcctg
aacgaggagatccagaaactccgggacctggtgcagaacaaagaggatgagctgcaggcc
aaggagacggacgaggtgaccgggaagggcatgcagcccgacattgtaatgatggatcgc
tactatggcgagatcagagaactggacaagaagattgccacacaaagctccatgttgtct
ggaggagactctggacggaccctggagactgtgattggggaaaaagaagacaagcagatg
cagctagataccatcaatcgcaggctggaccataagagacagaagctgagtgaccactca
gagcatgtgcagaagctgaggtcaaagatgaactctttgaaggaagagaagctgaagatt
gacagtgagctgcaacagcagacgaagttggaggagacaaagactagccgcatcaccgac
aacaaacttcatgaacaggacatccaggaagccaagacacagatcggaccacttgaggag
cagattgagcgccagcgccaggagaagatgaaattggtggctaccaaggaagacaagctt
gacggagccaaggcggagattgactgtgtgaagtcggaggccaaacaagtaaaggacgtc
aacggtgaaatcaagctgtacaaccagtctatgaaggcagacagactagaagagcgtcag
gaacggatgtcgaccatcactacgaaggagacaagtgtgaaccaggagcgtgaggagatc
acggagaatgtcaacaagctcagcaaggacctggccactcagcagatccgagagcgggag
ttgatggacaaccttcagctacggcagaagcagaaggaggtgggccgtctggagcgtgag
atcggcgtcctgcaagaccagatgggagactttgacactgccaacctggagagagagagg
aggaagttgctgcagaaggcagatgagatgcagaaagagcgcaacatctgcaaaggtcgt
caggagggtctggacaacatgatccgcaacacgaagaaggagttgcagaccgacatgttc
aaggacgctgggtccaagtatcgtgacatgatgatccaaatgaggacaactgagctggcc
aacagtgacctggagaagtactacagagctatggacaaggccatcatgaactaccatgtc
cagaagatggacgagatcaacaaaatcatccgggaactgtggaggaacacgtaccgagga
aacgatattgaaacaattgagattcgttctgatgacgaggacggcgctgccctgaagtcc
cgccgcatctaccactaccgtgtggtgatgatcaagggggacactgctctagatatgaga
ggccggtgcagcgctggacaaaaggtgttggcatccctgatcatccgtctggctttggcg
gaaacgttttgtgtcaactgtggaattctggccctggatgaacctacaacaaacctggac
agggagaacatagagagtctggcttacgctctcgtctcgattatcaaggctcggtcatgc
cagaaaaacttccaactggtcgtgatcacccatgacgaagactttgtggaactccttggg
cggtcagattatgtggatgacttttatcagatgagcaaggaccagtcagggtattcctgc
atcaccaagtctaaagtacagaatctacatcgaggctaa
DBGET
integrated database retrieval system
