KEGG   Haliotis rubra (blacklip abalone): 124271008
Entry
124271008         CDS       T07967                                 
Name
(RefSeq) LOW QUALITY PROTEIN: helicase-like transcription factor
  KO
K15711  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
Organism
hrj  Haliotis rubra (blacklip abalone)
Brite
KEGG Orthology (KO) [BR:hrj00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:hrj04121]
    124271008
   03400 DNA repair and recombination proteins [BR:hrj03400]
    124271008
Enzymes [BR:hrj01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     124271008
Ubiquitin system [BR:hrj04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    124271008
DNA repair and recombination proteins [BR:hrj03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    124271008
SSDB
Motif
Pfam: SNF2-rel_dom zf-C3HC4 zf-RING_UBOX zf-C3HC4_3 zf-C3HC4_2 zf-C3HC4_4 Helicase_C zf-RING_2 DEAD zf-RING_5 Prok-RING_4 zf-RING_6 zf-rbx1 U-box
Other DBs
NCBI-GeneID: 124271008
NCBI-ProteinID: XP_046562027
LinkDB
Position
Unknown
AA seq 1251 aa
MAMDIVNLPNSISQEDLEMLRTWVVENPTITEFFQNEDSQASQASHVSDAEELFGTLTTS
ISKSPRCDNVNSHESVRLTRESSIMGRRGTVSVYNAGNIKLGNLRPPLDEPMTTILDDRV
ARIEAATLDVSASSDQEVPLQLTLYGTTANRLRCQNILQDAEVDFDGKTESASDRSTLID
LTRSPDMSFDRSPDTTFDTLPDVAFYRSPELPFARFPQTFDSTPPTPFNITPRPLLSSLP
VPVLDNCLPGTSGATLLGSAHEELPEPSIGSLNPTVLNSLAEIDFSSSTERALDSIAQID
FGIEDQTEPVDLTTHVGPGVEATDSTREQIASWYTNFEPNPYIAVDSHREMVAHDDINSD
IDRVFENLNEGDKTSEQEPAEAVGTPLYPHQKQALSWMMSRENGDHLPPFCVEKANGEYL
NTLLNFSTPERPPSIRGGILADDMGLGKTLETIALILTNFVNNRPLAVPVPGKPRRGKEN
KIPSEDSLHDINSDLESKMKVENNNDEMFERLQKVDEIVTKMEEGKELPSSETADPSTHT
ADIQPSTDETKCGLGRLRLMKADSSNIETIDADNPEAQTANQHVQDMEKLKSVSSLKSSS
NEQGKKVILIDFQEQPSKRKRQRSSIPPSKYEQSKWRKLHLDRWSVDKESHRHSNPQDSV
TCDSDRKSSEDVAMDDGSDDSGTCMQDITDDVSKVNSEDIDTDLRHPVSNSDAQNTCGEG
PVTFSDDDDDDDDDDDDDDDELPDVDSKEEEDEMGEEKKEVCDADSDMKDFMTANHCDER
GRTISSDCDPRCTLIICPLSVMSNWQGQIEEHAHPNVHIDVHLYYGNQRCKDVNLLKQKD
VVITTYGILLSEFKEYLTKGASPLMTTEWLRVVLDEGHCIRNPKAKQTKAVLTLQSQRKW
VLTGTPIQNRMLDLWPLINFLNVTPLNEKHWWQSLLEKPLQRGKRIAFRRVQHLMGNIAM
RRTKNTLVDGEPLVKLPKREVYMERIKMSDEESRKYKSMEEQGKIQIKKYVRNNMLLKKY
ILVLEIMLRLRQMCCHSFLLPDKSDCIPSEDSDSEEEDFEKKRETLVNRLKVISESEEEC
SVCVDVLKTPVILPCAHYFCHTCILNAIKHMEQAEKGSATCPLCRAPISEDQIIDQPKEP
EPQIYGDWKSSTKVDALMSALVKMRSTDPSEKSLVVSQFTSFLTLMETPLRELKFKFVRL
MVNVCLLQRMEAVKKFSDPEPGSPTIFLISLRVVEAGLNLTAASRVFLMEP
NT seq 3753 nt   +upstreamnt  +downstreamnt
atggccatggacatcgtgaacctgccgaattcgatctctcaggaggacctggaaatgctg
aggacctgggtggtggagaatcctaccatcactgagtttttccagaacgaggactcacag
gcctcgcaggcctcccatgtttcagatgctgaggagctgttcggaactctcaccaccagc
atctcaaagtcgccaagatgtgacaatgtgaacagccacgaatctgtacgcctgacgcgg
gagtcgagcatcatgggtagacgcggaacagttagtgtctacaacgccgggaacatcaaa
cttggtaaccttagaccgccgctggatgaacccatgacaaccatcttagatgaccgtgta
gctagaattgaggcagctaccctggacgtgagtgctagctctgaccaagaggtgccactt
caactcacattatatggtaccactgctaacagactccgatgtcaaaacattcttcaggat
gccgaggtagattttgacggaaaaactgaatcggcctctgacagatcaactttaattgac
cttaccaggtcacccgacatgtcctttgacaggtcaccggatacgacctttgacacgcta
cctgatgtagcgttttacaggtcacctgagttaccgtttgcacggtttccgcaaactttc
gacagtacaccacctactccatttaacattacacccaggccactcttgtccagcttaccc
gtaccagtattagacaactgtttacccgggacttccggtgccacgttgcttggttcagcc
cacgaagaattaccagaaccatctattggtagtttaaacccgacagtacttaacagctta
gctgagatagatttttcaagctccacggagagagccttggacagtatagcccaaatagac
tttggtattgaagatcaaaccgagccagttgatctcacaacacatgtgggccctggggtc
gaggctacagactcaacgagggaacagatagcatcttggtacaccaatttcgaacccaac
ccgtatatagcagtggacagccatcgagaaatggtagcccatgatgacattaacagtgat
atcgaccgcgtgtttgaaaacctcaatgaaggtgacaagacgtcagagcaggaaccggca
gaggctgtgggaacgcccctgtatccccaccagaagcaggctctgtcctggatgatgagt
cgggagaatggcgaccacctgcctcctttctgtgtggagaaggccaacggggaatacctc
aacacattgctgaacttctcaacgccagagagaccacccagtatcaggggaggcattctg
gctgatgatatgggtctggggaagactctggagacgatcgccctgatactcaccaacttt
gtcaacaaccgacccctggctgttcctgttccaggcaaaccaaggcgagggaaagaaaat
aagattccgtcagaggactcacttcacgatataaactctgacctcgaaagcaagatgaag
gtcgaaaacaacaacgatgagatgtttgagcggcttcagaaggtcgatgagattgtcaca
aagatggaagaggggaaagaactgcccagttcagaaactgctgatccttccacacacacc
gctgacatacaaccatcaactgatgagacgaaatgtggattaggaaggctacgtctcatg
aaggcagacagttccaatattgagacaattgatgcagataatccggaggcccaaacagcc
aaccaacacgtgcaagacatggagaaactaaagtccgtttcatccctgaaaagctcatca
aacgaacagggaaaaaaggtcattttaatagatttccaggaacagccttctaaacgaaag
aggcaaagatcatctatccctccttcgaaatatgaacaatcaaagtggagaaaactgcat
ctagacagatggagtgtagacaaggaatcgcatagacactcaaacccacaggatagtgta
acatgcgattctgataggaagagtagtgaagacgttgcgatggacgacggtagtgacgac
tccggtacttgcatgcaggacatcaccgacgatgtcagcaaagttaactcggaggatatt
gacacggatcttaggcatcctgtcagtaacagtgacgcacaaaacacgtgtggagaagga
cctgtgacattcagtgatgatgatgatgatgatgatgatgatgatgatgatgatgatgat
gaacttccggatgtggatagtaaggaagaggaggatgagatgggggaggagaaaaaggaa
gtatgcgacgcagactctgacatgaaggacttcatgactgccaatcactgtgatgaaaga
gggcgtactatcagcagcgactgcgacccacggtgtaccctgattatctgccccttgagc
gttatgagcaactggcagggtcagattgaagaacacgcccatccaaacgtccacattgac
gtccatctttactatggcaaccagcgatgtaaggatgtcaatcttctcaagcagaaggat
gtagttatcacaacgtacggcatactgctgagtgagtttaaggagtacctaacgaaggga
gcatcccctctgatgacgaccgagtggctacgagttgtgctggacgaaggtcactgcatc
cggaacccaaaagccaaacaaaccaaagctgtgctcacacttcagtcacaacgcaagtgg
gtgctgacaggtacacccatccagaacaggatgctggatctgtggccgttgatcaatttc
ctcaacgtgacgcctctcaatgagaaacactggtggcaaagtttgctggaaaaaccattg
caacgtgggaagaggatagccttcagacgtgtccaacacctgatgggtaacatcgctatg
cgaaggacaaagaacaccctcgtagatggagagccccttgtgaagctgcccaagagagaa
gtgtacatggagcgaatcaagatgtcggacgaggagagcaggaagtacaagtccatggag
gagcaggggaagatccagatcaagaaatatgttcggaacaacatgctgctgaagaagtat
atcctggtgctggagatcatgctccggctgcgacagatgtgttgccatagcttcttgctg
cctgacaaatctgattgcatacctagtgaagactcggattccgaagaggaagacttcgaa
aagaagcgtgagactctggttaacaggctgaaggtcatcagcgagtcagaggaagagtgc
tctgtgtgtgtcgacgtcctgaagactcctgtgatactaccatgtgcacattacttctgt
cacacatgtatcctcaacgccatcaaacacatggaacaagcagagaagggttccgctacc
tgccccttgtgtcgagcaccgatatcagaggaccagataatagaccaaccaaaggaaccc
gaaccacagatctacggcgactggaagtcaagtacaaaggtggatgccctgatgagtgcc
ctggtgaaaatgagaagcaccgatccatctgaaaagagtctggtagtctcacagttcacc
tctttcctgactctcatggaaacaccactcagggagctcaagttcaaattcgtgagactg
atggtaaatgtctgcctactgcagcgcatggaagctgtcaagaagttctctgatcccgag
cctgggtcgcccaccatcttcctcatctccctccgtgttgtggaggcgggcctcaacctg
actgctgcgtccagggtgtttctcatggagccg

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