Hirundo rustica (Barn swallow): 120757105
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Entry
120757105 CDS
T09369
Symbol
TRIP12
Name
(RefSeq) E3 ubiquitin-protein ligase TRIP12 isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120757105 (TRIP12)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
hrt04121
]
120757105 (TRIP12)
Enzymes [BR:
hrt01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
120757105 (TRIP12)
Ubiquitin system [BR:
hrt04121
]
Ubiquitin ligases (E3)
HECT type E3
120757105 (TRIP12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WWE
UNC45-central
HEAT_2
Maestro_HEAT
Motif
Other DBs
NCBI-GeneID:
120757105
NCBI-ProteinID:
XP_039930138
LinkDB
All DBs
Position
10:complement(10773477..10852921)
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AA seq
2066 aa
AA seq
DB search
MSNRPNNNPGGSLRRSQRNTAGAQPQDDAVGGRSHLGQAKHKAHSPPESRKSISKTPKVQ
SNTTSEQSKGHFSKRGCSSSAVLIPQQEDPERVSTSEKQKTGQVPKKDNSRGVKRSASPD
YRRTNSPSSAKKPKALQHTETSSETNKPHTKSKRRHSDQEQPKSTQLPSTSKAHTRKGGA
AGSSRSQKRKRTENLSCIKSGSSVESTGTEEKSAKVSKLASKSVTSAKAGCSTITDSSSS
ASTSSSSSAVASASSTVPQGARVKQGKDQSKARRSRSASSPSPRRSSRDKEPSKTGGSSK
FDWAARFSPKVSLPKTKLSLPGSSKSETSKPGPSGLQAKLASLRKSTKKRSESPPAELPS
LRRSTRQKTTGSCASTSRRGSGLGKRGAAEARRQEKMADPDNNQDGVNSSAARTDEPPQG
AAASSSVAGAVGMTTSGESESDDSEMGRLQALLEARGLPPHLFGPLGPRMSQLFHRTIGS
GASSKAQQLLQGLQATDESQQLQAVIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEH
NFDIMNHACRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQCIDVAEQALTALEMLSRRH
SKAILQAGGLADCLLYLEFFSINAQRNALAIAANCCQSITPDEFHFVADSLPLLTQRLTH
QDKKSVESTCLCFARLVDNFQHEENLLQQVASKDLLTNIQQLLVVTPPILSSGMFIMVVR
MFSLMCSNCPTLAVQLMKQNIAETLHFLLCGASNGSCQEQIDLVPRSPQELYELTSLICE
LMPCLPKEGIFAVDTMLKKGNAQNTDGAIWQWRDDRGLWHPYNRIDSRIIEAAHQVGEDE
ISLSTLGRVYTIDFNSMQQINEDTGTARAIQRKPNPLANTNTSGHSELKKDDARAQLMKE
DPELAKSFIKTLFGVLYEVYSSSAGPAVRHKCLRAILRIIYFADAELLKDVLKNHAVSSH
IASMLSSQDLKIVVGALQMAEILMQKLPDIFSVYFRREGVMHQVKNLAESEALLTSPPKV
CTNGSGTLGTTTTINTGTATVASNAAADLGSPSLQHSREDSLDLSPQGRLSDVLKRKRLP
KRGPRRPKYSPPRDDDKVDNQAKSPTTTQSPKSSFLASLNPKTWGRLSTQSNSNNIEPAR
TAGVSGLARAASKDTISNNREKIKGWIKEQAHKFVEHYFSSENMDGSNPALNVLQRLCTA
TEQLNLQVDGGTECLVEIRSIVSESDVSSFEIQHSGFVKQLLLYLTSKSEKDAVSRDIRL
KRFLHVFFSSPLPGEEPLGRLEPLENAPLLALVHKMNNCLSQMEQFPVKVHDFPSGNGTG
SSFSLNRGSQALKFFNTHQLKCQLQRHPDCANVKQWKGGPVKIDPLALVQAIERYLVVRG
YGRVREDDEDSDDDGSDEEIDESLAAQFLNSGNVRHRLQFYIGDHLLPYNMTVYQAVRQY
SLQAEEERESTDDESNPLGRAGIWTKTHTIWYKPVREDEDGNKDCVGGKRGRAQTAPTKT
SPRNSKKHDELWHDGVCPSVLNPLEIYLISTPPENITFEDPSLDVILLLRVLHAISRYWY
YLYDNAVCKEIIPTSEFINSKLTAKANRQLQDPLVIMTGNIPTWLTELGKTCPFFFPFDT
RQMLFYVTAFDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRTVNRDELLKQAESVM
QDLGSSRAMLEIQYENEVGTGLGPTLEFYALVSQELQRADLGLWRGEEVTLANPKGSQEG
TKYIHNLQGLFALPFGRTAKPAHIAKVKMKFRFLGKLMAKAIMDFRLVDLPLGLPFYKWM
LRQETSLTSHDLFSIDPVVAKSIYHLEDIVRQKKRLEQDKTQTKESLQYALEALTMNGCS
VEDLGLDFTLPGFPNIELKKGGKDTPVTIHNLEEYLRLVIFWALNEGVARQFDSFRDGFE
SVFPLSHLQYFYPEELEQLLCGSKTDTWDAKTLMECCRPDHGYTHDSRAVKYLFEILSSF
DSEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNYLKLP
DYSTIEIMREKLLIAAREGQQSFHLS
NT seq
6201 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaccggcctaataacaatccaggggggtcactgcgacgttcacagaggaacact
gccggggcccagccacaagacgacgcagtaggaggaaggtcacacttagggcaggcaaaa
cataaggcacatagccctcctgagagtagaaaatctatttcaaagacacccaaagtgcag
tctaatactacttctgagcagtccaagggacacttttctaaaagaggctgtagttcatct
gctgttttaataccacaacaagaagatccagagagagtcagtacttcagaaaagcaaaaa
acggggcaagtgcctaagaaagacaattctcgtggagttaaacgcagtgctagtccggat
tacaggaggaccaattctcctagctctgctaaaaagcccaaagcacttcaacacactgaa
acttcctcagaaactaacaagccacatactaaatctaagagaagacactcagaccaagag
cagcccaaatctacacaattgccatcaacaagcaaggctcacaccagaaagggtggagct
gctggtagctcccgaagtcagaaaaggaaaaggacagaaaatctgtcttgtataaagagt
gggtcatcagttgaatcaactggcactgaagaaaagtcagcaaaagtctccaagctggct
tcaaaatcggtgacctcagccaaagctgggtgtagcaccatcaccgattcctcttcttca
gcttccacctcctcctcctcttctgctgttgcttctgcttcttctactgttcctcagggt
gccagagtgaagcagggaaaggaccagagtaaggctagacgttcccgttctgcatccagc
cccagtccaagaaggagtagcagggacaaagaaccaagtaaaacaggtggctcttcaaag
tttgactgggctgctcgattcagcccaaaagtcagtctccctaaaacaaaactgtctcta
ccaggctcttccaagtctgagacatcaaaacctggaccttcaggactacaggctaagcta
gcaagtctaagaaagtctacaaagaagcgcagtgaatcaccacctgctgagctccccagt
ttacggcggagcacacggcaaaagaccacgggctcctgtgctagcaccagtcggcgaggc
tctggcctgggcaaaagaggagcagctgaagctcgccgacaggagaagatggctgatcct
gacaacaaccaggatggagttaactcttcagctgcaaggacagatgagcctccccaggga
gctgcagcttctagttctgttgctggagctgtaggtatgacaacttctggagaaagtgag
tcagatgattctgagatgggaagactacaagctctattagaggctaggggtcttcctcct
cacctgtttggccctcttggtcctcggatgtcgcagctcttccacaggacaattggaagt
ggagctagttctaaagctcaacagcttttacaaggtctccaagccactgatgaaagtcag
caactacaggcagtgattgagatgtgccagctgttggttatgggaaatgaagaaacatta
ggaggatttccagtcaagagtgttgtaccagctttgataacactgctgcagatggagcac
aactttgacattatgaatcatgcatgtcgggccttaacatacatgatggaagcacttccc
agatcatctgctgtagtggtagatgcaattcctgtcttcttggaaaagctgcaagttatc
cagtgcattgatgtggcagagcaggcgcttacagccctggagatgttgtcacgcaggcac
agtaaagccattctgcaggcaggtgggctggcagactgtttgctgtatctggaattcttc
agtataaacgcacaaaggaatgcactagctatcgctgccaactgctgccagagtataaca
cctgatgagtttcactttgtggcagactctttgccactgctaacacaaaggttaacccat
caggacaaaaagtctgttgaaagcacttgtctgtgttttgcgcggctagtggacaacttc
cagcatgaagagaacttgctgcagcaggttgcttccaaggacttgctaacgaatatccag
cagctcttggtcgtgacgcctcctatcctgagctcaggaatgttcatcatggtggtgcgc
atgttctccctgatgtgctccaactgtcccacactggcagtccagctcatgaagcaaaat
attgcagaaacgcttcacttcctcctttgtggagcctcaaatgggagttgtcaagaacaa
attgaccttgttccacgaagtcctcaagaactttatgaacttacttctcttatctgtgaa
ctgatgccttgcctgccaaaagagggaatctttgctgttgatactatgctaaagaaagga
aatgcacaaaacacagatggtgcaatatggcaatggcgagatgacaggggtctctggcat
ccctataacaggattgatagtcgaataatagaggcagctcatcaggttggtgaggatgag
ataagcctgtctacacttgggcgtgtctatactattgattttaactctatgcagcaaata
aatgaggatactggaacagctcgtgccattcagcgaaaaccaaaccctttagccaataca
aacactagtggacattcggaattgaagaaggatgatgctcgagcacaattaatgaaagag
gacccagaactggcaaaatcctttatcaaaacactgtttggtgttctttatgaagtatat
agttcttcagctggacctgctgttagacacaagtgccttagagcaattcttaggataatt
tattttgctgatgctgaacttctgaaggatgtgctgaaaaaccatgctgtttcaagtcat
attgcctccatgctgtcgagtcaagaccttaagatagtagttggagccctgcagatggca
gagattttaatgcaaaagttacctgacatttttagtgtttacttcagaagagaaggggtg
atgcaccaagtaaaaaacttggcagagtccgaggctttgctaacaagccccccaaaagta
tgcactaatggatcaggaacgctgggaaccactaccaccatcaacactgggacagccact
gttgccagcaacgcggctgcagatctgggctctcccagcttacagcacagccgggaggat
tccttggatctgagcccacaggggcgactgagtgatgttctaaagagaaaaagactgcca
aaacgagggccaaggagaccaaaatactcccctccaagagatgatgacaaagtagacaat
caagctaaaagccctacaactactcagtctcctaaatcttctttcttggcaagtttaaat
cctaaaacatggggaagattaagcacacagtccaacagtaataatattgaaccagcacga
acagcaggagtaagtggtcttgcaagggctgcttccaaggataccatttccaataacaga
gaaaaaattaagggctggattaaggagcaagcccataaatttgtagaacattactttagc
tctgaaaacatggatggaagcaatcctgcactaaatgtattacagagactttgcactgca
actgaacaactcaacctccaggtggatggtggaacagagtgccttgtagaaatccgtagc
attgtctcggaatctgacgtctcctcatttgaaatccagcatagtgggtttgttaaacaa
ctgctgctctatttgacatctaaaagtgaaaaagatgctgttagcagggatatcagattg
aaaagatttcttcatgtatttttttcttctccacttcctggagaagagccccttggaaga
ttagagccattagaaaatgcacctttgttggcattagtccataaaatgaacaactgcctc
agtcagatggaacagtttcctgttaaagtgcatgacttccctagtggaaatggaacaggg
agcagtttttctcttaacagaggatcccaagctttaaaattcttcaatacacatcaatta
aaatgccaactgcaaagacatccagactgtgctaatgtgaaacagtggaaaggtggacct
gtgaagatcgatcctctggctttggtacaagccattgaaagataccttgtagttagaggc
tatggaagagttagagaagatgatgaagacagtgatgatgatgggtcagatgaagaaata
gatgaatctttggctgctcagttcttaaattcagggaatgtgagacatagattgcagttt
tacattggagatcacttgctgccatacaatatgactgtgtaccaagcagtcaggcagtac
agtttacaagctgaggaggagagggagtctacagatgatgaaagcaacccactgggaaga
gctgggatttggacaaaaacgcacaccatttggtacaagcctgtgcgagaggatgaagat
ggtaataaggactgtgttgggggtaaaagaggaagagcacaaactgctcccacaaaaacc
tcccctagaaattctaagaaacatgatgaattgtggcatgatggtgtatgcccttcggtg
ttaaatcctctggaaatttacctcatatctactccacctgaaaatataacatttgaagac
ccctcattagatgttattcttcttttgagagttttacatgctatcagtcgatactggtat
tacttgtatgataatgcagtctgcaaggagataattccaacctcagagtttatcaacagt
aaactgacagcaaaagcaaacaggcagcttcaggatcctttggtaattatgacaggaaac
atcccgacttggctgacagagcttgggaaaacatgcccatttttcttcccatttgatacc
cgccaaatgctgttttatgtaacggcctttgatcgtgatcgagccatgcaaaggctgctg
gataccaatccagagatcaatcagtcagattctcaggatagcagagtggcaccacggctg
gacaggaaaaaacgcactgtgaacagagatgagctgttgaaacaggcagaatctgtgatg
caggatctaggcagttcaagagccatgttggaaatccagtatgagaatgaagttggcaca
ggcctaggccctacactagagttctatgcacttgtatctcaggaactacagagagcagac
ttaggcctttggaggggagaagaagtgactttagccaacccaaaaggaagccaggaaggt
accaagtacattcataaccttcaaggcctttttgcacttccttttggtagaacagccaag
ccagctcacattgcgaaagttaaaatgaagttccgctttctgggaaaactaatggccaag
gcaatcatggacttcagactggtggaccttcctcttggacttccgttttataagtggatg
ctgcgacaggaaacttcattgacatcgcacgacttgttcagtattgatccagtagtagcc
aaatcaatatatcaccttgaagatattgtaagacaaaagaaaaggcttgaacaggataaa
actcagaccaaagaaagtctacagtatgcattggaggctctgactatgaatggctgctca
gtggaagatctagggctggacttcacacttcctgggtttccaaatatagagctgaagaaa
gggggaaaagatacaccagtcactatccacaatttagaggagtatctcagattggttata
ttctgggcactaaatgaaggtgttgccagacagtttgactccttcagagatggatttgag
tcggtgttcccccttagtcatctgcagtacttctatcctgaggagttggagcagctcttg
tgtggcagcaagacagacacttgggatgcaaagactttaatggaatgttgcaggcctgat
cacggttatacacatgacagtcgagcagtgaagtatctctttgaaattctcagtagtttt
gatagtgagcagcaaagactgtttcttcagtttgtgacaggcagccccagactgcctgta
ggaggttttcgaagtttgaatcctcccttgacgattgtacggaagacctttgagtccacg
gagaatcccgatgatttcttaccctcagtaatgacttgtgtgaactatctcaaattgccg
gactattcaactattgagataatgcgtgaaaaactcttgatagctgcgagagaagggcag
cagtcattccatctttcctga
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integrated database retrieval system
