Homo sapiens (human): 80781
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Entry
80781 CDS
T01001
Symbol
COL18A1, GLCC, KNO, KNO1, KS
Name
(RefSeq) collagen type XVIII alpha 1 chain
KO
K06823
collagen type XVIII alpha
Organism
hsa
Homo sapiens (human)
Pathway
hsa04974
Protein digestion and absorption
Disease
H00805
Vitreoretinal degeneration
H02074
Knobloch syndrome
Brite
KEGG Orthology (KO) [BR:
hsa00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
80781 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hsa04147
]
80781 (COL18A1)
00535 Proteoglycans [BR:
hsa00535
]
80781 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
hsa00536
]
80781 (COL18A1)
Exosome [BR:
hsa04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
80781 (COL18A1)
Proteoglycans [BR:
hsa00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
80781 (COL18A1)
Glycosaminoglycan binding proteins [BR:
hsa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
80781 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Fz
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
80781
NCBI-ProteinID:
NP_569711
OMIM:
120328
HGNC:
2195
Ensembl:
ENSG00000182871
UniProt:
P39060
Structure
PDB
LinkDB
All DBs
Position
21:45405165..45513720
Genome browser
AA seq
1751 aa
AA seq
DB search
MAPYPCGCHILLLLFCCLAAARANLLNLNWLWFNNEDTSHAATTIPEPQGPLPVQPTADT
TTHVTPRNGSTEPATAPGSPEPPSELLEDGQDTPTSAESPDAPEENIAGVGAEILNVAKG
IRSFVQLWNDTVPTESLARAETLVLETPVGPLALAGPSSTPQENGTTLWPSRGIPSSPGA
HTTEAGTLPAPTPSPPSLGRPWAPLTGPSVPPPSSGRASLSSLLGGAPPWGSLQDPDSQG
LSPAAAAPSQQLQRPDVRLRTPLLHPLVMGSLGKHAAPSAFSSGLPGALSQVAVTTLTRD
SGAWVSHVANSVGPGLANNSALLGADPEAPAGRCLPLPPSLPVCGHLGISRFWLPNHLHH
ESGEQVRAGARAWGGLLQTHCHPFLAWFFCLLLVPPCGSVPPPAPPPCCQFCEALQDACW
SRLGGGRLPVACASLPTQEDGYCVLIGPAAERISEEVGLLQLLGDPPPQQVTQTDDPDVG
LAYVFGPDANSGQVARYHFPSLFFRDFSLLFHIRPATEGPGVLFAITDSAQAMVLLGVKL
SGVQDGHQDISLLYTEPGAGQTHTAASFRLPAFVGQWTHLALSVAGGFVALYVDCEEFQR
MPLARSSRGLELEPGAGLFVAQAGGADPDKFQGVIAELKVRRDPQVSPMHCLDEEGDDSD
GASGDSGSGLGDARELLREETGAALKPRLPAPPPVTTPPLAGGSSTEDSRSEEVEEQTTV
ASLGAQTLPGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPGVPGPPGRAGPPGSPCLPGP
PGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGDTGPQGFP
GTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRG
PRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGR
EGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGP
GLPAGFDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGADGVPGFP
GLPGREGIAGPQGPKGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSV
PGPEGRPGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKG
EPGFRGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPGPP
GPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLE
AEMKGEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPG
PPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGPPGTMGASS
GVRLWATRQAMLGQVHEVPEGWLIFVAEQEELYVRVQNGFRKVQLEARTPLPRGTDNEVA
ALQPPVVQLHDSNPYPRREHPHPTARPWRADDILASPPRLPEPQPYPGAPHHSSYVHLRP
ARPTSPPAHSHRDFQPVLHLVALNSPLSGGMRGIRGADFQCFQQARAVGLAGTFRAFLSS
RLQDLYSIVRRADRAAVPIVNLKDELLFPSWEALFSGSEGPLKPGARIFSFDGKDVLRHP
TWPQKSVWHGSDPNGRRLTESYCETWRTEAPSATGQASSLLGGRLLGQSAASCHHAYIVL
CIENSFMTASK
NT seq
5256 nt
NT seq
+upstream
nt +downstream
nt
atggctccctacccctgtggctgccacatcctgctgctgctcttctgctgcctggcggct
gcccgggccaacctgctgaacctgaactggctttggttcaataatgaggacaccagccat
gcagctaccacgatccctgagccccaggggcccctgcctgtgcagcccacagcagatacc
accacacacgtgaccccccggaatggttccacagagccagcgacagcccctggcagccct
gagccaccctcagagctgctggaagatggccaggacacccccacttctgccgagagcccg
gacgcgccagaggagaacattgccggtgtcggagccgagatcctgaacgtggccaaaggc
atccggagcttcgtccagctgtggaatgacactgtccccactgagagcttggccagggcg
gaaaccctggtcctggagactcctgtgggcccccttgccctcgctgggccttccagcacc
ccccaggagaatgggaccactctctggcccagccgtggcattcctagctctccgggcgcc
cacacaaccgaggctggcaccttgcctgcacccaccccatcgcctccctccctgggcagg
ccctgggcaccactcacggggccctcagtgccaccaccatcttcaggtagagcttctctc
tcctccttgctgggcggggcccctccctggggaagcctgcaggacccagacagccaagga
ctctcgcccgccgcagccgctcccagccagcagctccaacgccctgacgtccgcctgcgc
acgccacttctgcaccccctggtgatgggctccctgggcaagcacgcggccccctccgcc
ttctcctctgggctcccgggcgcactgtctcaggtcgcagtcaccactttaaccagggac
agcggtgcttgggtctcccacgtggctaactctgtggggccgggtcttgctaataactct
gccctgctcggggctgaccccgaggcccccgccggtcgctgcctgcccctgccaccctcc
ctgccagtctgcggccacctgggcatctcacgcttctggctgcccaaccacctccaccac
gagagcggcgagcaggtgcgggccggggcacgggcgtgggggggcctgctgcagacgcac
tgccaccccttcctcgcctggttcttctgcctgctgctggtccccccatgcggcagcgtc
ccgccgcccgccccgccaccctgctgccagttctgcgaggccctgcaggatgcgtgttgg
agccgcctgggcgggggccggctgcccgtcgcctgtgcctcgctcccgacccaggaggat
gggtactgtgtgctcattgggccggctgcagagcgcatcagcgaggaggtggggctgctg
cagctccttggggaccccccgccccagcaggtcacccagacggatgaccccgacgtcggg
ctggcctacgtctttgggccagatgccaacagtggccaagtggcccggtaccacttcccc
agcctcttcttccgtgacttctcactgctgttccacatccggccagccacagagggccca
ggggtgctgttcgccatcacggactcggcgcaggccatggtcttgctgggcgtgaagctc
tctggggtgcaggacgggcaccaggacatctccctgctctacacagaaccaggtgcaggc
cagacccacacagccgccagcttccggctccccgccttcgtcggccagtggacacactta
gccctcagtgtggcaggtggctttgtggccctctacgtggactgtgaggagttccagaga
atgccgcttgctcggtcctcacggggcctggagctggagcctggcgccgggctcttcgtg
gctcaggcggggggagcggaccctgacaagttccagggggtgatcgctgagctgaaggtg
cgcagggacccccaggtgagccccatgcactgcctggacgaggaaggcgatgactcagat
ggggcatccggagactctggcagcgggctcggggacgcccgggagcttctcagggaggag
acgggcgcggccctaaaacccaggctccccgcgccaccccccgtcaccacgccacccttg
gctggaggcagcagcacggaagattccagaagtgaagaagtcgaggagcagaccacggtg
gcttcgttaggagctcagacacttcctggctcagattctgtctccacgtgggacgggagt
gtccggacccctgggggccgcgtgaaagagggcggcctgaaggggcagaaaggggagcca
ggtgttccgggcccacctggccgggcaggccccccaggatccccatgcctacctggtccc
ccgggtctcccgtgcccagtgagtcccctgggtcctgcaggcccagcgttgcaaactgtc
cccggaccacaaggacccccagggcctccggggagggacggcacccctggaagggacggc
gagccgggcgaccccggtgaagacggaaagccgggcgacaccgggccacaaggcttcccc
gggactccaggggacgtaggtcccaagggcgacaagggagaccctggggttggagagaga
gggcccccaggaccccaagggcctccagggcccccaggaccctccttcagacacgacaag
ctgaccttcattgacatggagggatctggcttcgggggcgatctggaggccctgcggggt
cctcgaggcttccctggacctcccggaccccccggtgtcccaggcctgcccggcgagcca
ggccgctttggggtgaacagctccgacgtcccaggacccgccggccttcctggtgtgcct
gggcgcgagggtccccccgggtttcctggcctcccgggacccccaggccctccgggaaga
gaggggcccccaggaaggactgggcagaaaggcagcctgggtgaagcaggcgccccagga
cataaggggagcaagggagcccccggtcctgctggtgctcgtggggagagcggcctggca
ggagcccccggacctgctggaccaccaggcccccctgggccccctgggcccccaggacca
ggactccccgctggatttgatgacatggaaggctccggggggcccttctggtcaacagcc
cgaagcgctgatgggccacagggacctcccggcctgccgggacttaagggggatcctggc
gtgcctgggctgccgggggcgaagggagaagttggagcagatggagtccccgggttcccc
ggcctccctggcagagagggcattgctgggccccaggggccaaagggagacagaggcagc
cggggagaaaagggagatccagggaaggacggagtcgggcagccgggcctccctggcccc
cccggacccccgggacctgtggtctacgtgtcggagcaggacggatccgtcctgagcgtg
ccgggacctgagggccggccgggtttcgcaggctttcccggacctgcaggacccaagggc
aacctgggctctaagggcgaacgaggctccccgggacccaagggtgagaagggtgaaccg
ggcagcatcttcagccccgacggcggtgccctgggccctgcccagaaaggagccaaggga
gagccgggcttccgaggacccccgggtccatacggacggccggggtacaagggagagatt
ggctttcctggacggccgggtcgccccgggatgaacggattgaaaggagagaaaggggag
ccgggagatgccagccttggatttggcatgaggggaatgcccggccccccaggacctcca
gggcccccaggccctccagggactcctgtttacgacagcaatgtgtttgctgagtccagc
cgccccgggcctccaggattgccagggaatcagggccctccaggacccaagggcgccaaa
ggagaagtgggcccccccggaccaccagggcagtttccgtttgactttcttcagttggag
gctgaaatgaagggggagaagggagaccgaggtgatgcaggacagaaaggcgaaaggggg
gagcccgggggcggcggtttcttcggctccagcctgcccggcccccccggccccccaggc
ccacgtggctaccctgggattccaggtcccaagggagagagcatccggggccagcccggc
ccacctggacctcagggaccccccggcatcggctacgaggggcgccagggccctcccggc
cccccaggccccccagggcccccttcatttcctggccctcacaggcagactatcagcgtt
cccggccctccgggcccccctgggccccctgggccccctggaaccatgggcgcctcctca
ggggtgaggctctgggctacacgccaggccatgctgggccaggtgcacgaggttcccgag
ggctggctcatcttcgtggccgagcaggaggagctctacgtccgcgtgcagaacgggttc
cggaaggtccagctggaggcccggacaccactcccacgagggacggacaatgaagtggcc
gccttgcagccccccgtggtgcagctgcacgacagcaacccctacccgcggcgggagcac
ccccaccccaccgcgcggccctggcgggcagatgacatcctggccagcccccctcgcctg
cccgagccccagccctaccccggagccccgcaccacagctcctacgtgcacctgcggccg
gcgcgacccacaagcccacccgcccacagccaccgcgacttccagccggtgctccacctg
gttgcgctcaacagccccctgtcaggcggcatgcggggcatccgcggggccgacttccag
tgcttccagcaggcgcgggccgtggggctggcgggcaccttccgcgccttcctgtcctcg
cgcctgcaggacctgtacagcatcgtgcgccgtgccgaccgcgcagccgtgcccatcgtc
aacctcaaggacgagctgctgtttcccagctgggaggctctgttctcaggctctgagggt
ccgctgaagcccggggcacgcatcttctcctttgacggcaaggacgtcctgaggcacccc
acctggccccagaagagcgtgtggcatggctcggaccccaacgggcgcaggctgaccgag
agctactgtgagacgtggcggacggaggctccctcggccacgggccaggcctcctcgctg
ctggggggcaggctcctggggcagagtgccgcgagctgccatcacgcctacatcgtgctc
tgcattgagaacagcttcatgactgcctccaagtag
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integrated database retrieval system