Herbaspirillum seropedicae SmR1: Hsero_0334
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Entry
Hsero_0334 CDS
T01268
Symbol
murD
Name
(GenBank) UDP-N-acetylmuramoylalanine-D-glutamate ligase protein
KO
K01925
UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:
6.3.2.9
]
Organism
hse
Herbaspirillum seropedicae SmR1
Pathway
hse00470
D-Amino acid metabolism
hse00550
Peptidoglycan biosynthesis
hse01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
Hsero_0334 (murD)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
Hsero_0334 (murD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
hse01011
]
Hsero_0334 (murD)
Enzymes [BR:
hse01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.9 UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
Hsero_0334 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:
hse01011
]
Precursor biosynthesis
Amino acid ligase
Hsero_0334 (murD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
MurD-like_N
Mur_ligase_C
NAD_binding_7
Menin
Reductase_C
Motif
Other DBs
NCBI-ProteinID:
ADJ61860
UniProt:
D8IW62
LinkDB
All DBs
Position
367630..369762
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AA seq
710 aa
AA seq
DB search
MNYSGKHVLVLGLGESGLAMARWLVYCGASVRVADTRGEAALAERLAALRADAPEAQAVL
GQPLSPALLEGVDFVAVSPGLAPEGELAPLMPAIAERSLPLWGEIELFAQALVALREETL
YQPKVLAITGTNGKTTVTRLTGLLCQRAGLSVQVAGNISPAALDVLREAVIRDKVFLAEL
AEQDALAAAQAAAEAEAQAAQQAVLDAQQEAEAEKHRRAAARIEEAASIAVPVLQSHPVA
PASLSESEQETAAQLDLLDAADASGEHAQDHQPPAADVSPSAAEAASQVDASAADEPDTS
ERVATDEADAVAQDASAAAAAATLDVASDVVPQAQPDAPATTGEAMNLGDFMEVSRKAEE
DALVEVPPPPPPEPTYRGSMPQAWVLELSSFQLHTTHSLQADAATVLNLTQDHLDWHGSM
EHYAADKARIFGQHTVRVLNRDDALVMQMAAAGSALSTFGLDEPTAPNSFGLVNDNGMLW
LANAFVHEDDEVPEGKRRRKQKDMLPPPVTLKRLMPADALKIRGAHNAMNALAALALCRA
IDLPMAPLLHGLRDYTGEPHRVELVGVIQEVDYYDDSKGTNVGATVAALNGLGLGGRPNR
IVLIAGGDGKGQDFSPLDLPVQKYARAVLLIGRDAPAIRAALADSGVELIDCASLEAAVE
KAGEIATAGDIVLLSPACASLDMFRNYAHRAEVFVDAVRELALSRGEVLA
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgaactattcgggcaaacacgttctggtgctcggactcggtgagtccggcctggcaatg
gcgcggtggctggtctactgcggcgccagcgtgcgcgtggccgatacccgtggcgaagca
gcgctggccgagcgcctggccgcgctgcgcgcggatgcgcccgaggcccaggccgtgctg
ggacagcccttgtccccggccttgctggagggcgtggatttcgtcgccgtcagcccgggc
ctggctcccgagggcgaactggcgccgctcatgcccgccatcgccgaacgcagcctgccg
ctgtggggcgagatcgaattgtttgcccaggcgctggtcgccttgcgcgaagagaccctg
tatcaacccaaggtgctggccatcactggcaccaacggcaagactaccgtgacgcgcctg
accggcctgttgtgccagcgcgccggcctgtcggtgcaggtggccggcaacatcagcccg
gctgcactggatgtgctgcgcgaagccgtgatcagggacaaggtcttcctggccgaactg
gccgagcaggacgccctggccgcggcccaggccgccgccgaagccgaggcccaggcagcc
cagcaggccgtgctggacgcgcagcaggaagccgaagccgagaaacaccgccgtgccgct
gcccgcatcgaagaagcggcctccattgcggtgccggtgctgcagtcgcatcccgttgcg
ccggcatccctatccgaatctgaacaggagacggctgcgcagctggacctgctggatgcg
gccgacgcctccggagagcatgcgcaggaccatcagccgcccgccgccgacgtatcgccc
agcgcagcagaggcagccagccaggtcgatgcaagcgctgccgatgagccggacaccagc
gagagggtggccaccgatgaggctgacgcggtggcacaagacgcgtccgccgccgccgcc
gccgcgaccctggacgtggcttccgacgtagtcccgcaagcccagccggatgcgcccgcc
accacgggcgaggccatgaacctgggagacttcatggaagtctcgcgcaaggccgaggaa
gacgcgctggtcgaggtgccgccgccaccgccgccggagcccacctatcgcggttccatg
ccgcaggcctgggtgctggagttgtccagcttccagctgcacaccacgcatagcctgcag
gccgacgccgccactgtgctgaacctgacccaggatcacctcgactggcacggcagcatg
gaacactatgccgccgacaaggcccgcatcttcggccagcacaccgtgcgcgtgctcaac
cgcgacgatgcgctggtcatgcagatggctgctgccggtagcgcgctctcgaccttcgga
ctggatgagccgaccgcgcccaacagcttcggcctggtcaatgacaacggcatgctgtgg
ctggccaatgccttcgtccatgaagatgacgaagtgcccgaaggcaagcgccgtcgcaag
cagaaggacatgctgccgccgccggtcaccctcaagcgtctgatgcccgccgacgccctc
aagatccgcggcgcacacaatgcgatgaacgccctggctgcgctggccctgtgccgcgcc
atcgatctgccgatggcgccgctgctgcacggcctgcgcgactacacgggtgaaccgcac
cgggtggagctggtgggcgtgatccaggaggtcgattactacgacgacagcaagggcacc
aatgtcggcgccaccgtggctgcgctcaacggcctgggcctgggtggacgtcccaatcgc
atcgtgttgatcgccggtggcgacggcaagggccaggacttttcgccgctggacctgccg
gtgcagaaatatgcccgcgcggtgctgctcattggccgcgatgcgccggccatacgcgct
gcgctggccgacagcggtgtcgagctgatcgattgcgccagcctggaagcggccgtggaa
aaggcgggcgagatcgctaccgccggcgacatcgtgctgctttcgccggcctgcgccagc
ctggacatgttccgcaactacgcccaccgcgccgaagtcttcgtcgatgcggtgcgcgaa
ctggcgctctcgcgcggtgaggtgctggcatga
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