Halobacterium salinarum R1: OE_2298F
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Entry
OE_2298F CDS
T00662
Symbol
ligB
Name
(GenBank) DNA ligase (ATP)
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
hsl
Halobacterium salinarum R1
Pathway
hsl03030
DNA replication
hsl03410
Base excision repair
hsl03420
Nucleotide excision repair
hsl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hsl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OE_2298F (ligB)
03410 Base excision repair
OE_2298F (ligB)
03420 Nucleotide excision repair
OE_2298F (ligB)
03430 Mismatch repair
OE_2298F (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hsl03032
]
OE_2298F (ligB)
03400 DNA repair and recombination proteins [BR:
hsl03400
]
OE_2298F (ligB)
Enzymes [BR:
hsl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
OE_2298F (ligB)
6.5.1.6 DNA ligase (ATP or NAD+)
OE_2298F (ligB)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
OE_2298F (ligB)
DNA replication proteins [BR:
hsl03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
OE_2298F (ligB)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
OE_2298F (ligB)
DNA repair and recombination proteins [BR:
hsl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
OE_2298F (ligB)
NER (nucleotide excision repair)
Other NER factors
OE_2298F (ligB)
MMR (mismatch excision repair)
Other MMR factors
OE_2298F (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
CAP13594
UniProt:
B0R4C9
LinkDB
All DBs
Position
656396..658081
Genome browser
AA seq
561 aa
AA seq
DB search
MKFGSFATFAADIEATDADLDVVALVAELFDAADSDLDVVARFVQGRVFPAHSETKLDIG
PQLCYTALSRAAGRNVDADDIEARLAETGDIGAVAGSLDLGGQTGLAAFGGGDDHADGLT
VSGVADELAALAAAAGDGSQSEKVTLLFGLFNQCTSREARYLARLVLGEMRIGVGEGAVR
DAIAEAFDVPTAAVQRALQVSNDYGLVAETARDSGTDALDAMGLEVGRPVQAMLAQAGTV
TDALDEWHEAAVETKFDGARVQVHYDGDDVVLYSRNMENVTGALPELVEFVENNVTAPVI
IDGEAVAADEDGDPLPFQEILKRFRRKHDVAAMREEISVELHAFDCLHAPSADGGEDLLD
APFSDRHRRLRSVVDDASAVSEVLVTDDADEIAAFEATALEGGHEGIMLKNPAAPYTPGD
RGKDWLKRKPDVETLDLVVTGAEWGEGRRASVLGTFLLSARDAAGDGFETIGKVATGLTD
EELAALSDRLEPHVRSEDGQTVDIEPAVVLEVGYEEIQASPTYSSGYALRFPRFVSVRED
KTPTTADTIERVERLAAQQQQ
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgaagttcggctcgttcgccacgttcgctgccgacatcgaagccaccgacgccgacctc
gacgtggtggcgctggtcgcggagctcttcgacgcggccgacagcgacctcgatgtcgtc
gcgcggttcgtccagggacgcgtgttccccgcccactccgagacgaaactcgacatcggg
ccacagctctgttacacggcgctctcgcgggctgcgggccggaacgtcgacgcggacgac
atcgaggcacgactggccgaaaccggcgacatcggggccgtcgccggcagcctggacctc
ggcggacagaccggactcgcggcgttcgggggcggcgacgaccacgccgacggactcact
gtcagcggtgttgcggacgaactcgcggccctggcggccgccgccggcgacggcagtcag
tccgagaaagtcacgctcctgttcgggctgttcaaccagtgcaccagccgggaagcccga
tacctcgcgcggctggtgttgggtgagatgcgcatcggcgtcggcgagggggccgtccgg
gatgccatcgctgaggcgttcgacgtgccgactgcggccgtgcagcgcgccctccaggtg
tcgaacgactacggcctcgtggccgaaaccgcacgcgacagcggcaccgacgcgctggac
gcgatggggctggaggtgggccgccccgtgcaggcgatgctcgcgcaggccggcacggtc
acggacgccctcgacgagtggcacgaggccgccgtcgaaacgaaattcgacggcgcacgc
gtgcaggtgcactacgacggggacgacgtggtgctgtactcgcggaacatggagaacgtg
acgggggcgctcccggagctcgtggagttcgtcgagaacaacgtcacggcccccgtgatc
atagacggtgaggccgtcgcggccgacgaggacggcgacccactgccgttccaggagatc
ctcaagcggttccgccgcaagcacgacgtcgccgcgatgcgcgaggagatcagcgtggag
ctgcacgcgttcgactgcctgcacgcgccgagcgccgacggcggcgaggacctactggac
gcgccgttttccgaccgccaccggcgactgcgctcggtggtcgacgacgcgtcggcggtc
tcggaggtgctcgtgaccgacgacgccgacgagatcgcggccttcgaggcgaccgcgctg
gagggcggccacgagggcatcatgctgaagaacccggccgccccgtacacgcccggcgac
cgcgggaaagactggctgaagcgcaagcccgacgtggagacgctggatctggtcgtgacc
ggcgcggagtggggggaaggccgccgcgcgtcagtgctggggacgttcctgttgtccgcg
cgggacgccgccggcgacggcttcgagaccatcgggaaggtcgccaccgggctgacagac
gaggagcttgcggccctcagcgaccgcctggagccacacgtccgcagcgaggacggccag
acggtcgacatcgagccggcggtggttctcgaagtcggctacgaggagatccaggcgtcg
ccgacgtactcctcggggtacgcgttgcggttcccgcggttcgtctccgtccgcgaggac
aaaaccccgacgacggccgacaccatcgagcgcgtcgagcggctcgccgcccagcaacag
cagtga
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