Hippoglossus stenolepis (Pacific halibut): 118106124
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Entry
118106124 CDS
T08308
Symbol
exosc5
Name
(RefSeq) exosome complex component RRP46
KO
K12590
exosome complex component RRP46
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118106124 (exosc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118106124 (exosc5)
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
118106124 (exosc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
118106124
NCBI-ProteinID:
XP_035010288
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All DBs
Position
4:complement(3534730..3537597)
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AA seq
222 aa
AA seq
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MAVMEARCSSNVMLREFACEQNFLSQPDGSASFVHGDTSVYAGVYGPAEVKVSKEIYDRA
TLEVVIQPKVGLPSVRERSQEQCVRETCEASLLLSLHPRSSLTLILQVLHDDGSLLSCLL
NAACMSLMDAGLPMSCLFCGVTCAIDADGQIITDPTAAQEKESRALMTFAIDSNKHNVLM
SSTKGSFSVNELQQCIAVSQKASEKLFQFYRDSVRRRYSKTL
NT seq
669 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgatggaggcgcgctgctcctcgaacgtgatgctgcgggagttcgcctgcgaa
cagaactttctgtctcaaccggacggatccgcgtccttcgtccacggagacacgagtgtg
tacgctggcgtctatggaccggctgaggtcaaagtcagcaaggagatctatgaccgggcg
actctggaggtggtgattcagcccaaagtgggacttccaagtgtaagggagcgatcacag
gagcagtgtgtgcgagaaacctgcgaggcgtctctgctcttgtcgcttcacccgcgctcc
tccctcacgctcattcttcaggtgctgcatgatgacggctcactcctgtcctgcttgttg
aatgcagcctgcatgtctctcatggacgcgggcctgccgatgagttgcctgttctgtgga
gtgacctgtgccattgacgcagacggtcaaatcatcacagaccccactgccgctcaggaa
aaggaaagtcgagctttgatgaccttcgctatcgacagcaacaaacacaatgtattgatg
tcctcaaccaaaggatcgttttcagttaacgagctgcagcagtgtatagcagtcagtcag
aaagcctccgagaagctgttccagttctacagggactctgtgaggcggcggtactccaaa
accctctga
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