Hippoglossus stenolepis (Pacific halibut): 118111156
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Entry
118111156 CDS
T08308
Symbol
cacna1fb
Name
(RefSeq) LOW QUALITY PROTEIN: calcium channel, voltage-dependent, L type, alpha 1F subunit
KO
K04853
voltage-dependent calcium channel L type alpha-1F
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04010
MAPK signaling pathway
hsp04020
Calcium signaling pathway
hsp04260
Cardiac muscle contraction
hsp04261
Adrenergic signaling in cardiomyocytes
hsp04270
Vascular smooth muscle contraction
hsp04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
118111156 (cacna1fb)
04020 Calcium signaling pathway
118111156 (cacna1fb)
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
118111156 (cacna1fb)
09153 Circulatory system
04260 Cardiac muscle contraction
118111156 (cacna1fb)
04261 Adrenergic signaling in cardiomyocytes
118111156 (cacna1fb)
04270 Vascular smooth muscle contraction
118111156 (cacna1fb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
hsp04040
]
118111156 (cacna1fb)
Ion channels [BR:
hsp04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
118111156 (cacna1fb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
CAC1F_C
Ca_chan_IQ
GPHH
PKD_channel
Motif
Other DBs
NCBI-GeneID:
118111156
NCBI-ProteinID:
XP_047196310
LinkDB
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Position
6:complement(1757856..1786265)
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AA seq
2079 aa
AA seq
DB search
MCEENRASAGRNGYTKAVDGEEGGGEGEEEEEGGEVDGEGGGGEERDGEWDEELDGENEG
GVRMTRTDTLHSTTSSTGTQRRRGLHAKKQVQGSNQVQRAPRALYCLKLNNPIRRAALSI
VEWKPFDIFILLAIFANCVALGVSKPFPEDDSNSTNHDLEQVEYVFLIIFTIETFLKILA
YGLVMHPSSYIRNGWNLLDFVIVIVGLFSVVLETMTHKSGEQATTHHVPGKPGGLDVKAL
RAFRVLRPLRLVSGVPSLQIVLNSIMKAMVPLLHIALLVLFVIIIYAIIGLELFIGRMHR
TCYYMGADNYVEDDPVPCAFAGHGRQCAINGTECRGRWDGPNGGITNFDNFFFAMLTVFQ
CITMEGWTDVLYWMNDAIGFELPWVYFVSLVIFGSFFVLNLVLGVLSGEFSKEREKAKAR
GDFQKLREKQQMEEDLCGYMDWITQAEDMDELDEDGNPRPSLGDLSDKKRGKFGWFSHSN
DTHASLPASDTASTNTENIDEEHTNCCQACCSQVMKISCCRTLRRWNRVCRRNCRTAVKS
VTFYWLVLLLVFLNTSLSASEHYNQPDWLTEVQDIANKVLLSLFTLEMLLKMYSLGLAHY
FVAFFNRFDCFVVCGGIVETILVEIGIMPPLGISVLRCVRLLRIFKVTRHWTALSNLVAS
LLNSMKSIASLLLLLFLFLIIFALLGMQLFGGKFNFDETQTKRSTFDAFPQALLTCFQIL
TGEDWNMVMYDGIMAYGGPVFPGMIVSVYFVILFICGNYILLNVFLAIAVDNLAGGDGDD
KKXEEGRGGEEEEEEEVEDEEVKVDIDEDTEYEEEEEPPEGQDDAGVQLKMADLAPPKEK
VLPIPEGSAFFCLSNTNPIRVACHTLIHHHIFTNLILVFIILSSCSLAAEDPIRAHSFRN
NILGYADYAFTSIFTVEILLKMTVHGAFLHQGSFCRNWFNLLDLLVVSVSLVSFFLHSSA
ISVVKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIKTIGNIMIVTTLLQFMFACIGVQL
FKGKFYRCTDEAKHTPDQCKGTFVVYKDGDVSHPMVRVRLWQNSDFNFDNVLMGMMALFT
VSTFEGWPALLYKAIDANGENSGPIYNYRVEISIFFIVYIIIIAFFMMNIFVGFVIITFR
EQGEQEYKNCELDKNQRQCVEYALKAQPLKLYIPKNPVQYKFWSIINSTWFEYVMFVLIL
LNTVTLAVQHYEQSKRFSHIMDILNMVFTGLFTAEMLLKLLALRLRHYFIDAWNSFDALI
VVGSVVDIVVTEFSSGEDSSRVSITFFRLFRVMRLVKLLSKGEGIRTLLWTFIKSLQALP
YVALLIAMIFFIYAVIGMQTFGKVAMQDHTQINRNNNFQTFPQAVLLLFRCATGEAWQEI
MLASLPGKRCDPESDYEPGEEFSCGSNFAIVYFISFFMLCAFLIINLFVAVIMDNFDYLT
RDWSILGPHHLDEFKRIWSEYDPEAKGRIKHLDVVALLRRIQPPLGFGKLCPHRVACKRL
VAMNMPLNADGMVTFNATLFALVRTALKIKTEGNPEQENEELRGIIKKIWKRMKPKLLDE
VIPPHEDEEVTVGKFYATFLIQDYFRKFRKRKEKGDLTGEPDATNPSAIQLCKAGLKTLQ
DLGPEMRLALNEDLDEDEEEDVMMEDEELEENTAYKGENGFGPERDRRGSTLATPTGPGG
VVGDVGVSNGGLIHRVGSLTKMPNGSDHDENLHRGDNMRSSVNHHHQRRPSEKNGILDRA
HKRPSYYKHGRRDSRDRYWRNGDTETYGEQGYYSRDEDNDSITSRDRHYPDDPRMYRDHY
DGHAPDTNNSYGNGYNEERRTTRRRLLPATPTGRKPSFNIQCLRRQGSSDDLPIPGTYHP
TSPPRRTRTQTFSNYETHQSSGRPMPASSTSWANPCPRRGRLLYAPLILVEEEGSPPWGG
GGPGGERTKGEAGRGVSVTGAEPRPVWYSGPAGTSAPPPPPYRAYTTLRVPSQLGAQFTE
KRGSADSLVEAVLISEGLGLYARDPKFVAFAKREIADACHMTVDEMESAASDLLGSASHS
LLSNTPATDPAALYSDEEPIRTGRDEDELADEMTCVTSF
NT seq
6240 nt
NT seq
+upstream
nt +downstream
nt
atgtgcgaggagaaccgagcaagtgccggtcgcaacggctacaccaaagcagtggatgga
gaggaggggggaggagagggggaggaagaggaggagggaggagaggtggatggagaagga
ggaggaggcgaggagagggatggagagtgggacgaagagctggacggagaaaacgaggga
ggtgtgaggatgacaagaaccgacacgctgcactcgaccacaagttcgactggaacacag
aggaggagaggactacacgctaagaaacaggtgcagggcagtaatcaggtccaacgagct
cctcgagctttatattgtctgaaactgaacaatccaatcagacgagccgctctctctatc
gtcgagtggaaaccctttgatatcttcatcttgttagccatctttgctaactgtgtcgct
ctgggagtttccaaaccgtttcctgaggacgactccaactccaccaaccacgacttggaa
caagtggagtacgtcttcctcatcatcttcaccattgagaccttcctgaagatcctggcc
tacggtctggtgatgcacccgagctcctacatccgcaacggctggaacctgctggacttc
gtcatcgtcatcgtcggattgttcagcgtcgtcctggagacaatgactcataagtctggc
gagcaggcgaccactcaccacgtgccggggaaacctggaggtctggatgtcaaagctctg
agagccttcagggtcctgaggcccctgaggctggtctctggagtccccagtctgcagatc
gtgttgaactccatcatgaaggcgatggttcctctgcttcacatcgctctgctggttctc
ttcgtcatcatcatctacgccatcattggcctggagctcttcatcggacgcatgcatcgg
acctgctactacatgggagcagataactacgtggaggacgacccggtgccgtgtgcgttt
gccggtcacggccgtcagtgcgcaattaacggcacagagtgtcgagggaggtgggacggt
cccaatggaggaatcaccaactttgacaacttcttctttgccatgttgaccgtgttccag
tgcatcacaatggagggatggaccgacgtgctgtactggatgaacgacgccatcgggttt
gagctgccctgggtttattttgtcagtctggtgattttcggctcgttcttcgttctcaac
ctggttctgggagtcctcagcggagagttcagtaaagagagggagaaggcgaaggcgcgg
ggagattttcagaagctgcgcgagaagcagcagatggaagaggatctgtgtggatacatg
gactggatcactcaggctgaggacatggacgaactggacgaggacggaaacccacgtccg
tctctgggcgacctgtccgacaagaagagagggaagtttggatggttcagtcactccaat
gacacacacgcaagtcttcctgccagtgacacagcgtctacaaacactgaaaacattgat
gaggaacacaccaactgctgtcaggcctgctgctcccaggtgatgaagatcagctgctgt
cggacgttgcgtcgctggaatcgcgtctgtcgcagaaactgtcgcactgctgttaaatca
gtgacattttattggctggttctgctgctcgtcttcctcaacacctccctcagcgcgtcc
gagcactacaaccaacctgactggctgacagaagtccaggacatcgccaacaaggtgctg
ctgtccctgttcacgttggagatgctgttgaagatgtacagtctgggtctggctcattac
ttcgtggcgttctttaaccgcttcgactgtttcgtggtgtgtggcggcatcgtggagacc
atcctggtggagataggcatcatgcctcctctggggatctctgtgctgcgctgcgtccgc
ctcctgcggatcttcaaggtcacacgccattggacggctctgtccaatctggtcgcgtcc
ctactgaactcgatgaagtccatcgcctccctgctgctcctcctcttcctcttcctcatc
atcttcgctctgctcggcatgcagctgttcggaggaaagtttaactttgacgagacgcag
accaaacgcagcacgtttgacgccttcccgcaggcgctgctcacctgcttccagatcctg
acaggcgaggactggaacatggtcatgtacgacggcatcatggcgtacggcggccccgtg
tttccagggatgatcgtctctgtttacttcgtcatcctcttcatctgtggaaactacatc
ctgctgaacgtcttcttggccatcgccgtggacaacctggccggaggagacggagacgac
aagaagtgagaggaggggcggggaggggaggaggaggaggaggaggaggtcgaagacgaa
gaagtgaaggtggacattgatgaagacaccgagtatgaggaggaagaggagcctcctgaa
ggacaagacgatgcgggggtccagttaaagatggccgaccttgctccacctaaggagaag
gtccttcccatcccagaaggcagtgcgttcttctgcctcagcaacacgaaccctatccgt
gtggcctgtcacactctgatccatcaccacatcttcaccaacctcatcctcgtcttcatc
atcctcagcagctgctcattggctgctgaggatccaatcagagcccactccttcaggaac
aacattctgggttatgcggactacgccttcacctccatcttcactgtagagatcctgtta
aagatgacggtccacggagcgttcctccatcagggctccttctgcaggaactggttcaac
ttgttggatctactggtcgtcagcgtctcactcgtctccttcttccttcactccagtgcc
atctcggtggtgaagatcctcagagtcctcagggtgctgcgacctctgagagccatcaac
agagccaaaggcctcaagcacgtggtccagtgtgtgtttgtggccatcaagacgatcgga
aacatcatgatcgtcacgactctgcttcagttcatgttcgcctgcatcggagttcagctg
ttcaagggtaaattttatcgctgtacggacgaagccaaacacacacctgatcagtgcaaa
gggacgtttgttgtgtataaagacggagacgtgagtcacccgatggtccgagtgcgtctg
tggcagaacagtgacttcaactttgataacgtgttgatggggatgatggcgctcttcacc
gtctccaccttcgagggctggccagcactgctgtacaaggccatcgatgctaacggggag
aactctggtcccatctataactaccgcgtggagatctccatcttcttcatcgtctacatc
atcataatcgccttcttcatgatgaacatcttcgtaggtttcgtcatcatcacattcaga
gagcagggagagcaggagtacaagaactgtgagcttgacaagaaccagcgtcagtgtgtg
gaatacgctctgaaggctcagcctctcaaactctacatccccaagaatccggtccagtat
aaattttggtcgatcatcaactcgacatggtttgagtacgtgatgttcgtcctcatcctg
ctcaacaccgtcacgctggctgttcagcactatgaacagtccaaaaggttcagccacatc
atggacatcctgaacatggtgttcactggactcttcactgcggagatgctgctgaagctg
ctcgctctcagactcaggcattatttcatcgacgcctggaactcattcgatgctctcatc
gtggtcggcagcgtggtcgacatcgtggtcacggagttcagtagtggagaggacagctct
cgtgtgtccatcaccttcttcaggctgtttcgagtcatgcgattggtcaagctgctgagt
aaaggggaagggattcgtacgctgctctggacgttcatcaaatcactgcaggcgctgcca
tatgtcgctctgctcatcgccatgatcttcttcatctacgccgtcatcggcatgcagacg
tttggaaaggtggcgatgcaggatcacactcagatcaacaggaacaacaacttccagacg
tttcctcaggctgttctcctcctcttcaggtgtgcgacaggtgaggcgtggcaggagatc
atgttggcgagtcttccaggaaaacgctgtgaccccgagtcagactacgaaccaggagaa
gaattcagctgcggcagcaacttcgccatcgtttacttcatcagcttcttcatgctctgt
gctttcctgattatcaacctttttgtcgccgtcatcatggacaattttgactatctgaca
cgtgattggtcgattctgggacctcatcatctggacgagtttaagaggatctggtctgag
tacgaccctgaggccaaaggtcgaatcaaacacctggacgttgtggctctgctcaggagg
attcagcctcctctggggtttgggaagttgtgtcctcacagagtggcctgtaagcgtctg
gtagcgatgaacatgcctctgaacgctgacgggatggtgacctttaacgctacgctcttc
gctctggttcgcacggcgctcaagatcaagactgaaggtaaccctgagcaggagaacgag
gagctgagggggattatcaagaagatctggaagagaatgaaaccaaaactactggacgaa
gtgattccaccacatgaagatgaggaagttaccgttggaaagttttacgccacgtttctg
atccaggattatttcaggaagttcaggaagaggaaggagaaaggagatttgaccggagag
cctgacgccaccaacccgtctgctatacagctgtgtaaagccggtctgaagacgctccag
gatctgggtccagagatgcgtctggctctgaacgaggacctggacgaggatgaggaggag
gacgtcatgatggaggatgaggagctggaggagaacactgcttacaagggtgaaaacgga
tttggaccagagagagatcggcgaggctccaccctggccacgcccacaggtcctggcggt
gttgttggagacgtgggtgtgtctaatgggggtctgatccaccgggtcggttctctcact
aagatgccaaatggcagcgaccacgacgaaaatcttcaccgtggagacaacatgaggtca
tctgtcaatcatcatcatcagcgacgcccatcagagaagaatggaatcctggaccgcgcc
cacaagagaccgtcatactacaaacatggaaggagggactcccgggacagatactggagg
aacggggacacagagacgtacggagagcaaggttactacagcagagacgaagacaacgac
agcatcacttccagagacagacattaccctgacgatcctcgaatgtacagagaccactac
gatggacacgcccccgacaccaacaatagctacggtaacggatacaacgaggagaggagg
accacacggagacgcctacttcctgctacacctacaggtcggaaaccgtcgtttaacatc
cagtgtctgaggaggcagggcagcagtgacgacctgcccatcccagggacctaccacccc
acctcgccgccacgccgcacacgcacacagacgttcagcaattatgagactcatcaatct
tccggccgccccatgccggcctcctcgacatcctgggcgaacccgtgtcctcgccgtgga
cgcctcctctacgctcctctcatcctggttgaggaggaaggcagtccgccctgggggggg
ggaggaccagggggggaaaggacgaagggagaagcaggaagaggggtcagtgtgacagga
gcagaacccagaccggtgtggtacagtggccctgcagggacatcagcgccgccgccgccg
ccgtacagagcctacaccacgctcagagttccctctcagctcggagctcagttcacggag
aagcgaggatcggccgacagtctggtcgaggcggttctgatctctgagggtctcggtctt
tacgctcgggatcctaagttcgtggcgtttgcaaagcgagagatcgcagatgcatgtcac
atgacggtggacgagatggagtccgctgccagcgacctgcttggctcggcgagccacagt
ttacttagcaacacccccgccaccgaccccgctgctctctacagcgacgaggagccaatc
agaacggggcgcgatgaggatgaactggctgacgagatgacctgtgtgacatcattttga
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