Hippoglossus stenolepis (Pacific halibut): 118117614
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Entry
118117614 CDS
T08308
Symbol
col6a2
Name
(RefSeq) collagen alpha-2(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04510
Focal adhesion
hsp04512
ECM-receptor interaction
hsp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118117614 (col6a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118117614 (col6a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
118117614 (col6a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hsp04147
]
118117614 (col6a2)
00536 Glycosaminoglycan binding proteins [BR:
hsp00536
]
118117614 (col6a2)
Exosome [BR:
hsp04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
118117614 (col6a2)
Glycosaminoglycan binding proteins [BR:
hsp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118117614 (col6a2)
Hyaluronan
Extracellular matrix or blood plasma proteins
118117614 (col6a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Motif
Other DBs
NCBI-GeneID:
118117614
NCBI-ProteinID:
XP_035025865
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All DBs
Position
11:6726111..6740779
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AA seq
1012 aa
AA seq
DB search
MLGLKVIVLCLLFGALAHGQATQCSKKNECPIDVYFTIDTSETIALQEPPPGSLVESIKK
FTEEFVQRLEDAEFKGAVQINWNVGGLHFSQNQSIISPIGSKKDFITGVRNIRYLGKGTY
IDCALARMTKEMQSQTSDNASLRFAVVITDGHVTGNLCGGIKVAAEKARDELIRLFVVAA
TKNVDETGLREIANSPATVYRREFMAVDLSQGRASIHIPTINRIIKTMKQMAYAECYKVP
CLETEGPQGPIGHSGQKGAKGDNGDPGLKGQSGRQGDPGIEGPIGQPGIKGESGHKGDKG
EIGSQGKKGVAGISGRNGTDGQKGKIGRIGAPGCKGDPGDRGPDGHPGDVGDRGLSGTDG
EKGDPGRPGRPGPLGPSGEAGPKGERGSPGSPGMPGKTGTPGKGGSAGTNGEPGRRGDYG
PKGGVGPDGTIGDKGEMGSEGLRGLAGELGNKGTKGDSGLPGPRGSPGAPGESGKNGTRG
DPGDAGSRGESGQAGPKGDYGRPGFSYPGTRGPSGDRGEKGNRGPRGGRGDCGQKGGPGV
KAGPGEAGEPGPQGEPGMRGPRGELGRDGDPGPEGDPGLTECDVMNYIRETCGCCDCEKR
CGALDIVFVIDSSESVGLTNFTLEKNFVINTINRLGSLAKDPQSDTGTRVGVVQYSHNGT
FQAIQLDDPKIDSMSAFKDAVKRLEWIAGGTWTPSALKYAYDHLIRDSRRAKANVTVVVI
TDGRFDPRDDDSLLTYLCSDPSIDVSAIGIGDMFDQIEENESLKSIACQRDGRVMGMRRF
ADLVAEEFIDKIEHVVCPEPIIVCPDLPCKSEPAVASCVQRPVDVVFMLDGSERMGVENH
RRAKEFIENVARRLTLANGPSDERNARLALLQYGSPIEQRVEFPLTHNLTVISDSLGSVK
YMDSSSALGSAIIHAVNNVLILQRGERKTRRNAEVAFVFITDGITSGEQLDEGVTAMRRA
EGVPTVIAMGTDTDEEVLQKVSLGDMSAVFRGDDYTIMNKPTFFERFIRWIC
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atgctggggttaaaggtcatcgtgctctgtcttctgtttggagccctggctcatggccag
gcaacacagtgcagcaaaaagaatgaatgtcccatagacgtgtacttcaccatcgacaca
tctgagactatcgccctgcaagagccgccccctggatcactagtggagagcatcaagaaa
ttcacagaggagttcgttcaacgtttagaagatgctgagttcaaaggtgctgtgcagatc
aactggaatgtcggcgggctgcacttctcccagaaccagtcaataatcagtcccatcgga
tccaagaaggatttcatcactggtgtcagaaacatccgctacctgggtaaaggcacctac
atcgactgtgccctcgcccgcatgaccaaggaaatgcaaagtcaaacctcggacaacgcg
tccctccgatttgctgtggtcatcactgacggccatgtgaccggaaatctatgtggaggc
atcaaggtggcagcagagaaggcacgtgacgagcttatccgattatttgtagtagcagca
acgaagaacgtggacgaaacaggtctgagggagatcgccaactctcctgcgacggtctac
aggagggagttcatggccgtggacctgagccaggggagagccagcatacatatacctacc
atcaaccgcatcattaagactatgaaacaaatggcctatgcagagtgctacaaagttccc
tgtctggagacagaagggcctcaaggtccaataggccacagtggacaaaaaggggctaaa
ggtgacaacggcgacccaggtctgaaaggacagagtggtcgccaaggagacccaggtatc
gagggtccaattggccagcccggtatcaaaggagaatcaggtcataaaggcgacaaggga
gagattggatctcagggtaagaagggtgtggctggtatctcaggacgcaacgggactgat
ggacagaagggtaaaattggaaggatcggtgctcccggctgcaaaggagacccaggcgac
agaggtcccgatggtcaccccggagatgtcggcgatcgtggtctttctggaactgatgga
gagaagggagatcccggacgtcctggtagacctgggccccttggcccgtctggagaggct
ggcccaaagggggagaggggaagtcctggatcacctggcatgcctggaaagacaggaacc
ccaggaaaaggtggatctgcaggaaccaatggagaaccggggaggagaggggactatggg
ccaaagggtggtgtagggccagatggaactataggagacaagggtgaaatggggtcagag
ggcctgagagggcttgcaggtgaattaggaaacaaaggtacaaagggagacagtggtctg
ccaggccccagaggatcaccaggagcaccaggagagtctgggaaaaatggtaccagaggt
gaccctggtgatgctggatctagaggagagtccggacaggctggaccgaagggagactat
ggaagacctggctttagctatcctggaacgagaggaccatcgggtgacagaggagagaag
ggtaaccgtggacctcgcggcggcaggggagattgtggtcaaaaaggcggacctggagtt
aaagcaggtccaggagaagcaggtgagccagggcctcagggtgaacctggaatgagagga
ccaagaggagagcttgggcgtgacggagatccaggtcctgagggagaccctggcctcact
gaatgtgacgtcatgaactacatcagggagacatgtggctgctgtgactgtgagaaacgc
tgcggagccttggacattgtgtttgtgattgacagctcagagtctgtgggcctcaccaac
ttcaccctggagaagaactttgtcatcaacaccatcaacagactgggatctcttgccaaa
gaccctcagtcagacacaggtacaagagtaggagttgtccagtacagtcacaatgggacg
ttccaggccatccaactcgatgaccccaagatcgactcaatgtctgctttcaaggatgca
gtgaagcgtctggagtggatcgctggtggaacgtggactccatctgctctgaaatatgcc
tacgaccacctgatcagggacagccgcagagccaaagccaatgtcactgtcgtggtcatc
accgatggacgctttgaccctagagatgacgactcgctgctcacctacctctgcagtgat
cccagtattgatgtgagtgccatcggtatcggagacatgttcgaccagattgaggagaat
gagagtctgaagagtatcgcctgccagagggacggcagggtgatgggcatgaggcgcttt
gcagacctggtggccgaggagttcattgacaagattgaacacgtggtctgcccagaacct
atcattgtgtgccctgatctcccgtgtaaatcagagcctgctgtggccagctgtgttcag
agaccagtagatgtggtgttcatgctggacggttctgagaggatgggagtggagaaccac
cgcagggccaaggagttcattgaaaatgttgcccgtcgcctcaccctggccaacggcccg
tcagatgagaggaacgcccgcttggctctgctgcagtatggcagccccatagaacagagg
gtggagttcccgctcacacacaatctcactgtgatctctgattcactggggtctgtcaaa
tacatggactcctcttctgctctgggcagcgccatcatccatgctgtcaacaatgtgttg
attttacagaggggagagcgcaagactcgccgcaacgctgaggtggcctttgtgttcatc
actgatggcatcacatcaggtgagcagctggatgagggcgtaaccgccatgagacgagcg
gaaggcgttcccacggtgatcgccatgggaaccgacacagacgaagaggtgctgcagaag
gtgtcgctaggggacatgtcggccgtctttagaggagatgactacaccattatgaacaag
cctacattctttgagcgcttcatccgctggatatgctag
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