Hibiscus syriacus (Rose-of-Sharon): 120159922
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Entry
120159922 CDS
T09559
Name
(RefSeq) LOW QUALITY PROTEIN: histone deacetylase 9-like
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03082
ATP-dependent chromatin remodeling
hsyr03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120159922
03083 Polycomb repressive complex
120159922
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
hsyr03036
]
120159922
Enzymes [BR:
hsyr01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
120159922
Chromosome and associated proteins [BR:
hsyr03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
120159922
HDAC complexes
Sin3A-HDAC complex
120159922
BRAF-HDAC complex
120159922
REST complex
120159922
SHIP complex
120159922
MiDAC complex
120159922
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
120159922
Heterochromatin formation proteins
Other heterochromatin formation proteins
120159922
Chromatin remodeling factors
NuRD complex
120159922
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
120159922
NCBI-ProteinID:
XP_039026354
LinkDB
All DBs
Position
Unknown
AA seq
429 aa
AA seq
DB search
MRSKGKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLAYDLHKKMEIFHPHKAYPVEL
AQFHSADYVEFLHRITPDTLHLFSNELVKYNLGEDCPVFENLFEFCQIYAGGTIDAARRL
NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGDMFFPGTGDVKDIGEREGKFYAINVPLKDGIDDTSFNRLFKT
IISKVVEMYQPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRIVKKFNLPLLVTGGGGY
TKENVARCWTFETGVLLDTELPNEIPENEYIKYFAPECLLNIPNGHIENLNSKSYLSTIK
VQVLENLRCIQHAPGVQMQEVPPDFYIPDFDEDEQNPDERMDQHAQDKQIQRDDEYYDGD
NDNDHHTSM
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgcgttcaaagggcaaaatatcctacttttacgacggtgatgtagggagcgtttacttt
ggtcctaatcatccaatgaaaccgcaccggctttgtatgactcaccatttggtccttgcc
tatgacctccataaaaaaatggaaatttttcatccccacaaggcttaccccgttgaacta
gctcagttccattctgctgattatgttgagtttttacatcgaattactccagatacgctg
catctgttctcgaatgaattggtcaaatacaatcttggagaagactgccctgtctttgaa
aacctgtttgaattttgtcaaatttatgctggtggcacaatagatgctgcacgaagatta
aacaatcaactatgtgatattgctataaattgggctggtggtttacatcatgccaagaaa
tgcgaggcatctggcttttgttacatcaatgacttggttttgggaatcttggagcttctg
aagtatcatgcccgtgttctgtatattgacatagatgtacatcatggcgatggcgttgaa
gaagccttttatttcactgacagggtgatgacagttagttttcacaagtacggagatatg
ttctttcctggaactggtgatgtgaaggatataggagaaagagaaggcaagttctatgcc
ataaatgtcccactcaaggatgggattgatgacaccagcttcaatagattgtttaagaca
attatttccaaggttgttgaaatgtatcaaccaggtgcaatagttcttcaatgtggggca
gattctcttgccggggatcgcttgggctgtttcaacctctcgattgatggacatgctgag
tgtgttagaattgtgaagaaattcaacctacctttactggttactggaggtggaggatac
acaaaagaaaatgttgcacgttgttggacttttgaaacaggagttcttttagatacagaa
cttcctaatgaaatcccagaaaatgagtatatcaaatattttgcaccagagtgtttgttg
aatattccaaatgggcacatagagaacttaaatagcaaatcatatcttagtacaatcaag
gtgcaagtgttggaaaatcttcgttgcatccaacatgctccgggtgtacagatgcaagag
gttccacccgatttctatattcctgattttgatgaagatgagcaaaatcctgatgagcgc
atggaccagcacgctcaagacaagcaaattcagcgcgatgatgaatactacgatggtgac
aacgataatgatcatcacacgtccatgtga
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