Hymenobacter tibetensis: MTX78_12790
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Entry
MTX78_12790 CDS
T08236
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
htb
Hymenobacter tibetensis
Pathway
htb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
htb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MTX78_12790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
htb03019
]
MTX78_12790
03009 Ribosome biogenesis [BR:
htb03009
]
MTX78_12790
Enzymes [BR:
htb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MTX78_12790
Messenger RNA biogenesis [BR:
htb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MTX78_12790
Ribosome biogenesis [BR:
htb03009
]
Prokaryotic type
rRNA helicases
MTX78_12790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
UOG73002
LinkDB
All DBs
Position
complement(3182208..3184121)
Genome browser
AA seq
637 aa
AA seq
DB search
MEKVRFEELSLSEEMQRAISEVGYEEASPIQSAAIPVLLEGRDVIGQAQTGTGKTAAFSI
PAIENIDTNSREVQVLVLCPTRELAVQVSGEIQKLGKYKRGLAVVPIYGGSSYDRQFRAL
ERGVQIVIGTPGRVMDHIERGTLKLEHCKMIILDEADEMLDMGFRDDIETVLKQMPQERQ
TVFFSATMSKPIMEMTKRYQKDPQIVKVNHQEMTVTNIEQSYFEVRGPQKKDVLTRLIDM
YNIKSGIVFANTKRMVDEIVGDLQAKGYFAEGLHGDMGQQQRQNTLDKFRKGTLEILVAT
DVAARGIDVENVEVVVNYDLPADEEYYVHRIGRTGRAGKLGKAFTFVSGRDIYKLRDIMR
FTKATIKQERVPSFEDVSEVKTTLMLNSIKDVITKGNLDKYVSRVQRLLDQDQEDGITSL
DVAAALLKMTMKEDKRAQESLDASRTQGAARPGYTRLFVTMGKKDQIHPRDIVDLIAENT
GLTAAKVGDISLYDKFSFVEVPSEFTEEVVSQLGRTNINGRPVSFNVATPRQEGDAQQEG
GNFGDRARRGPGGFGGGERREGGYGGNRGGGSYGGGYKGGNREGGSGYGSREGGFGGNRG
GGSYGGNRGGGSYGGGSRGGSSTYGGGYKGKRDNQGD
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaagtaagatttgaagagctttcgctctcagaagaaatgcagcgcgctatttcg
gaagtaggctatgaagaagcctccccgattcaatcggctgctatccccgtactactcgaa
ggccgtgatgtaatcggccaagcgcagacgggtactggcaaaactgccgcttttagtatc
cctgcaattgaaaacatcgacaccaactcccgcgaggtgcaggtactggtgttgtgccca
acccgcgaactagcggtgcaggtgtctggcgaaatccagaagctcggcaagtataagcgt
ggcttggctgtagtgccaatctacggtggtagctcctacgaccggcagttccgtgctctg
gagcgcggcgtgcagatcgttattggtacccctggccgcgtaatggaccacatcgagcga
ggcacgttgaagctagagcattgcaaaatgatcatcctcgatgaggccgacgaaatgctg
gacatgggcttccgcgacgacatcgagacggtgttgaagcagatgccgcaagagcgccag
acggtgttcttctcggctaccatgagcaagccgatcatggagatgaccaagcgctaccag
aaggacccgcagattgtgaaggtcaaccatcaggaaatgacggttaccaacatcgagcag
agctacttcgaagtgcgtggtccgcagaagaaagacgtgctgacccgcctcatcgacatg
tataacatcaagtcgggcatcgtcttcgcgaacacgaagcgcatggttgacgagatagta
ggcgacttgcaggccaaaggctacttcgccgaaggtttgcacggcgatatgggccaacag
cagcgccagaatacactcgacaagttccgcaaaggcaccctggaaatcctggtagctacc
gacgtagctgctcgcggtatcgacgtggagaacgtggaagtggtagtgaactacgacttg
cctgccgacgaagaatactacgtgcaccgcattggccgtacgggccgcgctggtaagttg
ggcaaggccttcactttcgtgagtggccgcgacatctacaagctgcgcgacatcatgcgc
ttcacgaaagctaccatcaagcaggagcgggtgccatcgttcgaggatgtatcggaggtg
aaaaccacgctcatgctcaattctatcaaggacgtcatcacgaaaggcaacctcgataag
tacgttagccgcgtgcagcgtttgcttgatcaggatcaggaagatggcatcacgtcgttg
gacgtggcggctgctttgttgaaaatgacgatgaaagaagacaagcgcgcacaggaaagc
ctggacgccagccgtacgcagggcgctgctcgccctggctacacccgtctcttcgtcacg
atgggtaagaaagaccagattcatccccgcgacattgtggacctgattgccgaaaatacc
ggcttgacggctgcgaaagtgggcgacatctcgctctacgataaattcagcttcgtagaa
gtgccttcagaattcacagaagaagtggttagccagcttggtcgtacgaacatcaacggc
cggccggtgtcgttcaatgtggccacgcctcgccaggaaggggatgcccagcaagagggt
ggcaacttcggcgaccgtgctcgtcgtggccccggtggattcggtggtggcgagcgtcgt
gaaggcggctacggcggcaaccgcggtggcggcagctacggtggtggctataagggcggc
aaccgcgaaggcggaagcggctacggcagccgcgaaggtggcttcggtggcaaccgcggc
ggtggcagctatggcggcaaccgtggtggcggtagttacggcggcggtagccgtggtggc
agcagcacctacggtggcggctacaaaggcaagcgcgacaaccaaggcgattaa
DBGET
integrated database retrieval system
