Homalodisca vitripennis (glassy-winged sharpshooter): 124364183
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Entry
124364183 CDS
T09217
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
hvi
Homalodisca vitripennis (glassy-winged sharpshooter)
Pathway
hvi04512
ECM-receptor interaction
hvi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hvi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124364183
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
124364183
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hvi04147
]
124364183
00536 Glycosaminoglycan binding proteins [BR:
hvi00536
]
124364183
Exosome [BR:
hvi04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
124364183
Glycosaminoglycan binding proteins [BR:
hvi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124364183
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
124364183
NCBI-ProteinID:
XP_046675424
EnsemblRapid:
LOC124364183
LinkDB
All DBs
Position
6:30632323..30823349
Genome browser
AA seq
1781 aa
AA seq
DB search
MWRGTVVFSVLAVSALLRSTDAAACQGCSNPFTCDCTGIKGEQGELGIHGLPGQEGPPGE
IGPDGPFGPKGEKGRMGEFGEGGEKGYRGDIGYQGVQGPPGIPGYPGASGVMGPPGLEGC
NGTDGRPGGPGYPGVPGPRGDPGQDGRKGPPGEAGEGGINSPGAKGDRGESGQPGLQGPV
GYRGQEGPRGPPGLAGDMGLRGDPGLQGLRGDDGDMKPGKKGMRGDQGQQGEPGPPGTPG
NGVPFGGTETSNTFKGPKGFPGQKGDSGMQGIKGEIGARGPPGFPGLPGQKGYKGEQGPE
GQRGKQGLLGPEGPAGVKGQKGAPGFAGLDGDPGTKGDLGEVGRPGRPGDQGPEGPPGIY
DPTLDEIIKGAQGSQGPLGFPGPQGFPGKGGSQGTVGTIGPPGAPGAPGQPGGRGPTGLS
LKGERGNDGAPGTPGPQGRSGPSGPPGVIGKKGFAGETVIGPRGPDGLQGRPGTPGLTGD
RGELGPKGQKGFPGFGVPIQGPVGDKGLPGPQGDPGWPGFNGIDGVPGQKGPKGDDCGYC
PPGPRGLKGEVGTDGRPGSPGNPGRPGLVGPRGIPGPKGRDGSVGEKGMKGWKGQPGLAG
VDGPKGEKGIIIYPPEVDSHLLAGDKGFPGYIGRTGLIGDLGDKGFQGYDGIKGAKGLKG
VIGEPGINGNDGRPGSDGYNGLKGQQADFVGREYLLRGEPGFNGWRGEKGQAGDKGARGF
PGDMSEVLIDILGETGPPGPEGDRGADGQKGYKGIAGETGFAGQPGLQGPAGPAIPGPMG
LKGYPGERGEPGFRGSIGAPGYFGPKGVAGRDGDKGARGDPGLSILAGEMGPIGFPGDKG
QPGDEGPQGLKGSRGYSGFKGLKGEKGAPGLYGRTGREGARGPPGDIISGRPGIPGNPGL
PGFPGDIGRPGAKGADGPAGSPGLKGLKGEFGFQGRRGVDGDEGIAGFPGRPGIKGLDGA
RGMEGDAGDMGPQGFPGYMGVAGPPGPDGPKGQRGERGDQGPIGFQGLPGFKGQVGDSGP
MGPQGLPGDSSFSGMKGEPGDAGYRGPIGFPGMPGMDGMPGMKGDDGIVYDGVEGAKGLK
GEPGFYGIPGQNGLNGTAGDLGAKGMKGFPGDQGYQGFPGAKGRAGLPGIKGMMGPVGRR
GFDGDKGERGMDGDPGEMGLPGFPGDIGDRGPSGLQGPPGPKGFVGEPGGPVYTTAPRGD
RGDPGMNGLMGKKGFIGDIGFPGGYGLKGQIGDIGFQGPPGPDGGPGKQGPRGDVGEPGV
PVSAILERGEPGEPGVDGIPGRPGFSGQKGAPGEYGPDGPDGPPGPKGYSPRGPKGMQGD
QGLSIPGTPGMFGKPGRDGAQGLPGSKGPQGEPGYAYLSPKGQPGDVGLTGLLGDRGLKG
MKGDSGLPGRIGPPGPDGFPGPSGLDGLDGLPGFQGLKGVKGNRGDTPYYFEAAIRGQPG
DRGDDGLIGLPGPIGVPGLPGLNGLKGVRGDIGFPGQAGLPGFPGFKGDRGYPGNPGLEG
QPGPKGYPGQPGIPAPAKREPPSRGFFFTFHSQNEVVPTCPKNTRMMWSGYSLLHFMGNA
KAHGQDLGAPGSCLMRFSTMPFLFCNLNEVCDYASRSDYSYWLSTEEEMPMMMTPIPANE
LTKYISRCAVCEAPTRVIAVHSQTMAIPPCPSGWEELWIGYSFIMHTDAGAEGGGQSLVS
PGSCLREFRPTPFIECHGIGRCNYFTTAYSYWLATIEEYEQFRRPHQQTLKGKTQSLTRI
SRCAVCIRQKERKATQPDRVPSVPSAQYWRSNTRYWPRRNY
NT seq
5346 nt
NT seq
+upstream
nt +downstream
nt
atgtggcgcggcacggtcgtcttctccgtgctggcggtctccgcgttgctgagatccacg
gacgctgcggcttgtcaaggatgttcgaatccattcacatgcgactgtaccggcatcaaa
ggagagcagggagagctggggatacacgggctgccgggacaagagggacctcctggagaa
attggcccggacggaccctttggaccaaaaggagagaaggggcgcatgggagaatttgga
gagggtggggaaaaaggctatagaggcgacataggctaccaaggtgttcaaggaccccca
ggaattcctggatatccaggagcatcaggagtcatgggcccaccaggactggaaggttgt
aatggaacagatggcagaccgggtggtccaggttatcctggggtaccagggccccgtgga
gatccaggacaggatggacgcaaaggaccccctggggaggcaggagaaggtggtattaac
agtccaggagccaagggtgaccgaggagagagtggccaaccaggattgcagggtccagtg
ggttatcggggacaggaagggccaaggggaccacctggtctagcaggcgatatgggtctg
agaggggatccagggcttcaagggctgagaggagacgatggggacatgaagccagggaag
aagggtatgagaggagatcaaggacaacagggagagcccggacctcccggaacaccaggg
aatggtgtgccctttggtggtactgagacctccaacaccttcaagggacccaagggattt
ccggggcaaaagggagactctggaatgcagggcatcaagggtgaaataggagccagaggc
cctcctggcttcccaggattgcctggacagaagggatacaaaggagagcaaggaccggag
ggccagagaggtaaacaagggctgctagggccagagggtccagcaggagtcaagggtcag
aaaggagctcctggatttgctgggttagatggagatccaggcacgaagggcgatcttgga
gaggtggggagaccaggacgaccaggagatcagggtcctgaaggaccaccaggtatctac
gacccgaccctagacgagataatcaagggagcacaaggaagccagggacccttaggtttt
cctggaccacaggggtttccggggaaaggaggttcacaaggtactgtcggaacaataggc
ccaccaggggcccctggagcaccaggtcaacccggaggaagaggtcctacaggactttca
ctcaagggtgaacgaggaaatgatggagcaccaggaacaccaggaccacagggtcgatca
gggccttcaggcccaccaggggttatcgggaagaagggatttgcaggtgaaactgtgatt
ggtcctcgaggtccagatggacttcagggacgtcctggtactccaggccttacaggagac
cgtggtgaattgggacctaaaggacaaaagggttttcctggttttggagtaccaattcaa
gggccagttggcgataaaggattgccaggacctcagggagaccctgggtggccaggtttc
aacggaattgatggcgttcctggccagaagggacccaaaggagacgactgtggttactgt
ccaccagggcctagaggactcaaaggagaagttggcactgatggacggcctggatcacca
ggaaacccagggcgaccgggactagtggggcctcgaggcataccaggacccaagggacga
gatgggtctgtgggagagaaagggatgaaaggatggaagggccagccaggtcttgctggc
gttgatggcccaaaaggagagaagggtattattatataccctccagaagtggatagtcac
ctgctagcaggggacaaaggatttcctggttacatcggtagaactggattgattggagat
ttgggagataaaggttttcagggttatgatggtatcaaaggagccaaaggcctgaagggt
gtaattggtgagccaggaattaatggaaatgatgggcggccaggatccgacggctacaac
ggattgaaggggcagcaagcagattttgtgggcagagaatacctgctgaggggagagcca
gggttcaacggttggagaggggagaagggacaggctggagataagggagctagaggtttt
cctggtgacatgtctgaggtcttgattgatattctgggagaaacaggaccccctggacct
gaaggagacagaggtgctgacggccagaagggatacaagggtatagcaggagaaactgga
tttgccggacagccaggattgcaggggcctgcaggaccagcaattccaggtcctatggga
ctaaaaggttacccaggagagagaggagaaccaggtttccggggatccataggtgctcca
ggctattttggacctaaaggcgtagcgggtagagatggagataaaggtgcccgaggagat
cctggtctgagcatcctggcaggagaaatgggacctatcggattcccaggggacaagggt
cagccgggagatgagggacctcagggactcaagggttccaggggatattcaggcttcaag
ggtctaaagggtgaaaaaggagctccaggtctctacggacgtactggacgagagggagca
agaggcccccctggagatatcatctctggtagaccaggaattccaggaaatcctggactg
cccggtttccctggagatattgggcgccctggagcaaaaggagctgatggcccagcaggt
tcccctggcctgaaagggctgaagggagaattcggatttcagggtcgtagaggagtggat
ggagatgaaggtatagccggattcccaggtcggcctggaataaagggactcgatggggct
cggggaatggaaggagatgctggggacatggggccacaaggtttcccaggatacatggga
gtggcagggccaccaggcccagatggacccaagggacaaagaggagaaagaggagatcag
ggacccataggtttccaaggacttccaggttttaagggacaagttggagactctggacca
atgggaccacagggattacctggagattcatcattcagtggtatgaagggtgaacctgga
gatgcaggttatcgtggacccattggattccctgggatgcctggaatggatggaatgcct
ggaatgaaaggagacgatggtatagtttatgatggtgtagaaggcgctaaaggcttaaag
ggagagcctggattctacggtattcccggacaaaatggactaaatggaactgcaggagat
ttaggtgcaaaaggtatgaaagggtttccaggagatcaagggtaccagggcttccctgga
gccaagggacgtgcaggattacccggaatcaaaggcatgatgggacctgttggccgaaga
ggattcgatggggataagggagaaaggggaatggatggagatccaggagagatgggattg
ccaggttttccgggagatattggagacagaggaccatctggtttgcaggggcctccaggt
cccaaggggttcgtgggagagccaggaggacctgtttacaccaccgctccccgtggcgac
aggggagatcctggaatgaatggactgatgggcaaaaaaggattcataggagatatagga
ttccctggtggatacggtttaaagggacaaataggagacataggattccagggtcctccc
ggaccagatggaggcccaggtaaacaaggaccccgaggagatgtaggagaacctggagtg
cctgtaagtgcaatcttagagaggggtgaacctggagaacctggagtggacggtattcca
ggtagacctggattttcaggacagaaaggggctccgggagaatacggacctgatggacca
gacggacctcctggaccaaagggctatagccctagaggacctaagggcatgcaaggcgat
caaggactttcaattcctggaacacctggaatgtttggaaaacccggtcgtgacggtgca
caagggctacccggatctaaaggacctcaaggagaacctggatatgcctaccttagtcct
aaaggccagccaggagacgtaggcctaactgggttgctgggagatcgagggttgaaaggg
atgaaaggagacagtgggcttcctggaagaattggacctcctgggccagatggcttccca
ggtcccagtgggctggatggtttggatggacttccaggcttccagggccttaaaggagtc
aaaggaaatcgaggtgacactccctactactttgaggcagccatcaggggtcagccagga
gacagaggggatgatggtctaatagggttacctggtccaattggagtaccaggattacct
ggattgaatggattgaagggtgtgcgaggcgatatcggtttcccaggacaagcgggatta
ccaggtttcccaggatttaagggagacagaggttatcctggaaatccaggattggaagga
cagccaggacctaaaggttatcccggtcaaccaggcataccagctccagctaagagagag
ccaccatcccgaggatttttcttcacattccactcccagaatgaggtcgtccccacctgt
cccaagaacacgcggatgatgtggtccgggtattccctgctccactttatgggcaatgcc
aaggcccatgggcaagacctgggggctcctggaagttgcctgatgaggttctcgacgatg
cccttcctgttctgtaacctgaacgaagtgtgtgattatgcaagccgcagtgattacagt
tattggctctcaactgaggaagagatgccaatgatgatgacgcctatccctgccaatgaa
ctgaccaaatacatctctaggtgtgccgtatgtgaagctcctaccagagtcatagcagta
cacagccagaccatggccatccctccttgtccctcaggctgggaggaactctggatcggc
tacagtttcatcatgcacacagatgctggggcagagggaggaggccaatcgttagtcagt
ccaggctcctgcctgcgggagttccgacccactcccttcattgagtgccacggcatcggc
cgatgcaactacttcaccacagcgtactcgtactggctggccaccatagaagagtatgaa
cagttccgcaggcctcaccagcaaactctcaagggcaagacacaatcgctcacacgcatc
agtcgctgcgcagtctgcatccgccagaaggaacggaaggcaacacagcccgaccgtgtg
ccaagtgtgcccagcgcacaatattggcgctcaaacactcgatattggccaaggaggaac
tactag
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integrated database retrieval system
