Haloferax volcanii: HVO_1565
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Entry
HVO_1565 CDS
T01200
Symbol
ligA
Name
(GenBank) DNA ligase (ATP)
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
hvo
Haloferax volcanii
Pathway
hvo03030
DNA replication
hvo03410
Base excision repair
hvo03420
Nucleotide excision repair
hvo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hvo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HVO_1565 (ligA)
03410 Base excision repair
HVO_1565 (ligA)
03420 Nucleotide excision repair
HVO_1565 (ligA)
03430 Mismatch repair
HVO_1565 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hvo03032
]
HVO_1565 (ligA)
03400 DNA repair and recombination proteins [BR:
hvo03400
]
HVO_1565 (ligA)
Enzymes [BR:
hvo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HVO_1565 (ligA)
6.5.1.6 DNA ligase (ATP or NAD+)
HVO_1565 (ligA)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
HVO_1565 (ligA)
DNA replication proteins [BR:
hvo03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
HVO_1565 (ligA)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
HVO_1565 (ligA)
DNA repair and recombination proteins [BR:
hvo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
HVO_1565 (ligA)
NER (nucleotide excision repair)
Other NER factors
HVO_1565 (ligA)
MMR (mismatch excision repair)
Other MMR factors
HVO_1565 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ADE02689
UniProt:
D4GYZ4
LinkDB
All DBs
Position
1433356..1435113
Genome browser
AA seq
585 aa
AA seq
DB search
MQFAEFAARAAEIEAEPADLAVVSLLSDLFSDAGDDLPTVARFVQGRVFPAWDSTTLDIG
PRLCHEAIARAAGPNVSADDVEDRLADRGEIGAVAASYDFGGQRGLAAFGSGEQDGLTVA
EVDSELRALAAASGSGSEETKLKTLYGLFNRTDPDEARFLARLVLSEMRIGVGEGTVRDA
VAEAFLVAPADAAAIRDDDADAETEAAARERRNEAIAAVARALQVSNDYGMVAGLARDEG
EAGLDGVRLEVGRPVQAMLAQAGTAADALGEWGTAAVETKFDGARVQVHRDADGEVSLFS
RNMEDVTDALPEVVEFVAGAVDDPVILDGEVVAMDDGGEPLPFQEILRRFRRKHDVDRMR
EEVRVELRAFDCLHAAGDDLLADPLAARHDRLTALLGDDSPAVSDLLLSDDPDEIAAYEA
DALDAGHEGIMLKNPDAPYSPGDRGKNWLKRKPDVETLDLVVTGAEWGEGRRAEFLGTFL
LSARVEAESGDDAFETIGKVATGITDEELAELTDLLEPEIEREAGKEVDIRPSVVFEVGY
EEIQTSPTYSSGYALRFPRFVTVREDKTAETADSLDRVERLADSQ
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atgcagttcgccgagttcgccgcccgcgccgccgagatagaagccgagccagcggacctc
gcggtcgtctcgctcctctcagacctcttttcggacgccggcgacgacctcccgacggtc
gcccggttcgtccaaggtcgcgtcttccctgcgtgggactcgaccacgctcgacatcggc
ccgcggctctgccacgaggccatcgcccgcgccgccggcccgaacgtctccgccgacgac
gtggaagaccgcctcgccgaccgcggcgaaatcggcgcggtcgccgcgagctacgacttc
ggcggccagcgcggcctcgccgccttcggctcgggcgaacaggacggcctgaccgtcgcc
gaagtcgattcggagctccgcgccctcgcggccgcctccggctccggcagcgaggagacg
aagctcaagacgctctacggcctgttcaaccggaccgaccccgacgaggcgcgcttcctc
gcgcggctcgtcctctccgagatgcgcatcggcgtcggtgagggaaccgtccgcgacgcc
gtcgcggaggcgttcttggtcgcccccgcggacgccgccgccatccgcgacgacgacgcc
gacgcggagaccgaagccgccgcccgcgagcgcagaaacgaggccatcgccgccgtcgcc
cgcgccttgcaggtgtcgaacgactacggcatggtcgccggactcgcccgcgacgagggc
gaagccggactcgacggggttcgcctcgaagtgggccgccccgtgcaagcgatgctggca
caggccggcaccgccgccgacgcgctcggcgagtggggaaccgccgcggtcgagaccaag
ttcgacggcgcgcgcgtgcaggtccaccgcgacgccgacggcgaggtgtcgctgttttcg
cgcaacatggaggacgtgaccgacgcgctccccgaggtggtcgagttcgtcgccggcgcg
gtcgacgaccccgtcatcctcgacggcgaggtcgtggcgatggacgacggcggcgagccc
ctgccgtttcaggagattctccgtcgcttccgccgaaaacacgacgtagaccggatgcgc
gaggaggtccgggtcgaactccgggcgttcgactgcctgcacgccgccggcgacgacctc
ctggccgacccgcttgccgcccgccacgaccgactgaccgcgctcctcggtgacgactca
ccggccgtctcggacctgctcctctcggacgaccccgacgaaatcgccgcctacgaggcc
gacgccctcgacgccggccacgagggtatcatgctgaagaaccccgacgcgccgtactcg
ccgggcgaccgcgggaagaactggctgaagcgcaagcccgacgtggagacgctggacctc
gtcgtcaccggcgcggagtggggcgagggtcgccgcgcggagttcctcgggacgttcctg
ctttcggcccgcgtcgaagccgagtccggggacgacgccttcgagaccatcggcaaggtc
gccacgggcatcaccgacgaggagttggccgagttgaccgacctcctcgaacccgaaatc
gaacgcgaggcgggcaaggaggtcgacatccgcccgtcggtcgtcttcgaagtcggctac
gaggagattcagacctcgccgacgtactcctcgggctacgcgcttcggttcccgcggttc
gtcaccgtccgcgaggacaagaccgccgagacggccgactcgctggaccgcgtggagcga
ctggccgactcgcagtga
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