Haloquadratum walsbyi C23: Hqrw_2571
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Entry
Hqrw_2571 CDS
T01942
Symbol
ligB1
Name
(GenBank) DNA ligase (ATP)
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
hwc
Haloquadratum walsbyi C23
Pathway
hwc03030
DNA replication
hwc03410
Base excision repair
hwc03420
Nucleotide excision repair
hwc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hwc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Hqrw_2571 (ligB1)
03410 Base excision repair
Hqrw_2571 (ligB1)
03420 Nucleotide excision repair
Hqrw_2571 (ligB1)
03430 Mismatch repair
Hqrw_2571 (ligB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hwc03032
]
Hqrw_2571 (ligB1)
03400 DNA repair and recombination proteins [BR:
hwc03400
]
Hqrw_2571 (ligB1)
Enzymes [BR:
hwc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Hqrw_2571 (ligB1)
6.5.1.6 DNA ligase (ATP or NAD+)
Hqrw_2571 (ligB1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
Hqrw_2571 (ligB1)
DNA replication proteins [BR:
hwc03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
Hqrw_2571 (ligB1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
Hqrw_2571 (ligB1)
DNA repair and recombination proteins [BR:
hwc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
Hqrw_2571 (ligB1)
NER (nucleotide excision repair)
Other NER factors
Hqrw_2571 (ligB1)
MMR (mismatch excision repair)
Other MMR factors
Hqrw_2571 (ligB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Adhesin_E
SASRP1
DUF1510
Motif
Other DBs
NCBI-ProteinID:
CCC40410
UniProt:
G0LKX0
LinkDB
All DBs
Position
complement(1583177..1585033)
Genome browser
AA seq
618 aa
AA seq
DB search
MKYSELAEVYTDVAATSATTQKGTLLADCFLDVYNNTEKSLLPVTVRLVQGRVFARWEAA
EIGVSTAGAADAISKATGVESEQIETWWREEGDLGDAAAYAVDDRVQQTLTATPLTVTRV
YETLREVASYAGSGSQQKQRDEIAGLISDASPLAARYIVRTVTGSMRLGVGEGIVRNALA
SAFLDMSDDAADAVQRAIDLTNDVAVVAQRVAEQGQPGLDDVDLELFRPIKPMLAKQAES
IQTAVDELAADPKHIERNHNIELSHSGAVLIEFKYDGIRAKIHRDGDEIRVYTRRLSDVT
EQFPDVVSAARDHIDAEHYIIEAELVGYDPQSNDDTPVTFQTLAQRIQRTDNVATIAKSI
PVTTYVFDLLALNGESLLTDTLEMRLERLNTILSTKATSDSKSASTHNAHSSTSVTTVSN
DQYQSSSSLRRAQCTWATTQTTATEFYEDALAAGHEGVMIKNPTRPYQPGSRVGYQRKIK
PTMEPLDLVVTRAKWSEGRKSDFLGRPYLACRTADGNLAEVGRMHTGFTDDQLETFTNRV
EPLIEHVEGREATLTPAVVLAVEYEEIQISSTYDSGYALRFPRLKQIRHDCDPSQADSLE
RVERLYEQQSLDESQTSV
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
gtgaagtactctgaactcgctgaggtatatactgacgtcgctgcgacatcagcaacgacc
cagaaggggacgctcctcgctgattgtttcttagatgtctataataataccgagaaatcg
ttgcttccggttaccgttcgacttgtccagggtcgtgtattcgctcgctgggaagcagcg
gaaattggtgtttcaaccgctggtgctgcagacgcgattagtaaggcaaccggtgtcgag
agcgaacagatcgagacatggtggcgagaggagggtgatcttggtgatgctgctgcatac
gctgttgatgatcgcgtacaacagacactcactgcaacaccgctgacagtcacccgtgta
tatgagacactccgcgaggttgctagttatgcaggttcgggtagtcaacaaaaacagcga
gacgaaattgctggactcatctctgatgcatcaccactcgctgctcgatatatcgttcga
accgtaacaggatcaatgcgacttggtgttggtgaaggaatcgttcgtaatgcacttgca
agcgcattccttgacatgtctgatgatgctgcggatgccgtccagcgagcgattgactta
accaacgatgttgctgttgtcgcgcagcgtgttgctgagcaggggcaacccgggttagat
gatgttgatcttgagttatttcgtccaattaagccaatgctcgcaaagcaagcagagagt
attcagactgcggttgatgaacttgccgcagatccgaagcacattgagagaaatcataat
atagagttatcacacagtggagcagtcctcattgagttcaaatatgatggtattcgtgct
aagatacaccgcgatggtgatgaaatacgagtatatacacgacgactttctgatgtgaca
gagcagttcccggatgttgtctcagcagcacgtgatcatattgatgctgagcattatatt
attgaggcagagcttgttggatacgacccacaaagtaacgatgataccccagtcacattc
caaacgcttgcacagcgtatccaacgaaccgataacgtcgccacgattgcgaagtcgatt
ccggtcacaacatatgtctttgatttacttgccctcaatggtgaatcattgctaacggat
acgcttgagatgcggttagaacgcctcaatacaatccttagcacaaaggcgacgtcagat
agtaaatccgcctcgacacataatgctcactcttcaacgtctgttacgaccgtgagtaat
gatcaatatcaatccagctcatcactgagacgggcacagtgtacgtgggcaacaacacag
acaacagcaacggagttctatgaggatgcacttgctgctggtcatgagggtgtgatgata
aaaaatccgacgcgaccgtatcaacccgggtctcgagttggatatcagcggaaaataaag
ccaacaatggagccactcgatctggttgttacccgggcaaagtggagtgaggggcgtaaa
agtgactttctcggtcgaccgtaccttgcatgccgaactgctgatggtaatctcgcagag
gttggtcggatgcataccggattcactgatgatcaacttgagacgttcacaaaccgtgtc
gaaccattgattgaacatgttgaagggagagaagcaacgctcacacctgctgttgtgctc
gcggttgaatatgaggaaatacagatctcatcaacatatgattctgggtatgcacttcga
tttccacgattgaaacaaatccgacatgactgtgacccatcgcaggcagactcacttgag
cgcgttgagcggttgtatgaacaacaatcactcgatgagagtcaaacgagtgtataa
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